Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11460 249 / 4e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G33760 130 / 1e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 126 / 5e-33 MEF22 mitochondrial editing factor 22 (.1) AT3G16610 124 / 2e-32 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G77170 122 / 3e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14850 123 / 5e-32 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 119 / 2e-30 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39350 118 / 2e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G04370 118 / 3e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 118 / 3e-30 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014211 [exp] 429 / 2e-149 AT3G11460 791 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022702 [exp] 311 / 5e-104 AT3G11460 641 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010320 [exp] 136 / 7e-37 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10029436 [exp] 127 / 2e-33 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033858 [exp] 126 / 3e-33 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040648 [exp] 124 / 2e-32 AT4G18750 376 / 1e-119 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018264 [exp] 117 / 3e-31 AT3G12770 179 / 8e-51 mitochondrial editing factor 22 (.1) Lus10008136 [exp] 119 / 8e-31 AT5G39350 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020657 [exp] 119 / 1e-30 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G211400 [exp] 314 / 3e-104 AT3G11460 772 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G152300 [exp] 127 / 2e-33 AT4G33990 489 / 1e-162 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 125 / 1e-32 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G043400 [exp] 124 / 2e-32 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G108000 [exp] 123 / 4e-32 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.011G052300 [exp] 122 / 8e-32 AT2G33760 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G095100 [exp] 120 / 4e-31 AT5G50390 865 / 0.0 EMBRYO DEFECTIVE 3141, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.017G001000 [exp] 119 / 1e-30 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G006800 [exp] 119 / 2e-30 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G088600 [exp] 118 / 2e-30 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022703 pacid=23178531 polypeptide=Lus10022703 locus=Lus10022703.g ID=Lus10022703.BGIv1.0 annot-version=v1.0 ATGAAGTATTCAGAAATTTCCACAGTGACTTACAGGGTCACAACCACCGTCGTCGACTGGAGCCATCCATCATGGAACTCCCAGCTAAGAGAGCTAGCAA ACAAATCCCTATTCTCAAACGCTCTGCATCTCTACCTCCGTATGCTCCGCTCCGGAGCAACTCCAAATGCGTTTACTTTCCCGTTCGTTCTCAAGTCCTC CGCCGTCCTGTCTATCCCCTTCACCGGCGAGCATTGCCAAGCCACCAGAACAGGATGCTTGGAAGAACCTTTCGTCCAGACCGCATTGATATCCATGTAC TCCAAATGCGGTTTACCAGATGGTGCACGTAAGGTGTTCGATGAAAATCCCCAGTCAAGAAAACTTACAGTTTGCTACAATGCTTTAATCGCCGGGTCCG CCTTGAATACGAGAGTAAAGGATACCGTGTTGCTTTTTAATGAAATGAGGGGACTTGAAGTGCCGATCTATGGAGTCACCATGCTTGGAATTGTTCCTGT TTGTGGAGTTCCAGGTAACTTGGGGCTTAGGGTTTCTGTGCATTGTTGTTGTCTGAAGTTTGGATTGAATTTGGACTCGTCAGTTGGGAATGGCTTGCTG TCGATGTACTTGAGATGTGGAGAAATTGTTAGTGGACGGAAACTGTTCGATGAAATGCCAGAGAGAGGGTTGGTTACCTGGAACGCCATGATCAATGGCT ATGCTTAG
AA sequence Show only first row Show all	>Lus10022703 pacid=23178531 polypeptide=Lus10022703 locus=Lus10022703.g ID=Lus10022703.BGIv1.0 annot-version=v1.0 MKYSEISTVTYRVTTTVVDWSHPSWNSQLRELANKSLFSNALHLYLRMLRSGATPNAFTFPFVLKSSAVLSIPFTGEHCQATRTGCLEEPFVQTALISMY SKCGLPDGARKVFDENPQSRKLTVCYNALIAGSALNTRVKDTVLLFNEMRGLEVPIYGVTMLGIVPVCGVPGNLGLRVSVHCCCLKFGLNLDSSVGNGLL SMYLRCGEIVSGRKLFDEMPERGLVTWNAMINGYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10022703 [exp]	0	1
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10026424 [exp]	2.8	0.9254
					Lus10036489 [exp]	4.2	0.9228
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10030787 [exp]	6.3	0.9210
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10035017 [exp]	7.5	0.9167
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026991 [exp]	8.1	0.9227
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10042232 [exp]	9.4	0.9160
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10008829 [exp]	9.5	0.9117
AT4G18130		PHYE	phytochrome E (.1)		Lus10004593 [exp]	9.7	0.9194
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001331 [exp]	10.4	0.9179
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10036490 [exp]	11.2	0.9130

Compare expression of checked genes

Lus10022703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.