Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57790 293 / 4e-97 F-box family protein (.1) AT4G00893 257 / 1e-82 unknown protein AT3G56470 256 / 2e-82 F-box family protein (.1) AT4G12370 229 / 6e-73 unknown protein AT4G10660 225 / 6e-71 CDC68-related (.1) AT3G18720 179 / 1e-52 F-box family protein (.1) AT1G49360 178 / 3e-51 F-box family protein (.1) AT4G10695 169 / 2e-50 CDC68-related (.1) AT4G12382 132 / 1e-37 F-box family protein (.1.2) AT2G44735 97 / 3e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014208 [exp] 748 / 0 AT1G57790 286 / 2e-94 F-box family protein (.1) Lus10021352 [exp] 546 / 0 AT1G57790 292 / 1e-96 F-box family protein (.1) Lus10017027 [exp] 537 / 0 AT1G57790 286 / 6e-93 F-box family protein (.1) Lus10024904 [exp] 115 / 1e-27 AT1G57790 97 / 2e-21 F-box family protein (.1) Lus10019204 [exp] 87 / 8e-19 AT1G57790 79 / 2e-16 F-box family protein (.1) Lus10004476 [exp] 70 / 9e-13 AT1G57790 92 / 4e-20 F-box family protein (.1) Lus10013738 [exp] 67 / 4e-12 AT1G57790 73 / 3e-14 F-box family protein (.1) Lus10029943 [exp] 65 / 3e-11 AT1G57790 81 / 4e-16 F-box family protein (.1) Lus10029926 [exp] 59 / 3e-10 AT1G57790 72 / 4e-15 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G079300 [exp] 537 / 0 AT1G57790 313 / 5e-105 F-box family protein (.1) Potri.006G212600 [exp] 520 / 0 AT1G57790 294 / 2e-97 F-box family protein (.1) Potri.012G106800 [exp] 91 / 6e-20 AT1G57790 99 / 6e-23 F-box family protein (.1) Potri.004G134900 [exp] 58 / 5e-09 AT4G17565 99 / 8e-23 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.012G106750 [exp] 54 / 5e-08 AT1G57790 57 / 7e-09 F-box family protein (.1) Potri.002G166500 [exp] 50 / 2e-06 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.014G093200 [exp] 50 / 2e-06 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.002G015700 [exp] 49 / 2e-06 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1) Potri.003G171300 [exp] 49 / 5e-06 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G127700 [exp] 48 / 5e-06 AT5G55150 56 / 2e-08 Protein of unknown function (DUF295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10022706 pacid=23178580 polypeptide=Lus10022706 locus=Lus10022706.g ID=Lus10022706.BGIv1.0 annot-version=v1.0 ATGGCGGGTAGAAAGAGACGCAAGGCGAAATTGTCAACGGAAACCGTGACCAGAAGGTTGACGACCGACAACAGTGAAGAAGACGCTTCAGAACTTCATA AAACTTGGTCTGAACTCCCAACAGATCTTCTCGAAACGGTACTCTCTCGATTGTCGTTCCGAGACAATATTCGTGCTTCAGCAGTTTGCAAGCGATGGAA GTTGTGTGCAGTTTCGGTAAGAGTGGCGAGGCAACCTCCATGGCTGATGTACTTCCCAAAATCGAGCAACCTGTACGAGTTGTACGATCCAGCACGGCGC AAGACCTATTTCATGGAGTTACCCGAGTTATCCGGGTCGAGAGTATGCCATGCTAGAGCCGGGTGGTTGCTGCTCTACAACCCCAGCACCCATCATGTGT TCTTCTTCAATCCGTTTTCTCAAGAGGTCGTGGAGCTGCCAAGTTTCGAGTTGAGTTTCCAGGTAGTCGCCTTCTCTGGCCCACCAACTTCTTCTGGCTG CGTAGTGCTTACACTAAAACATCTAAATCCTACCGGTGTCGACATCAGCACTTGTCGCCCCGGGTCAACAGAGTGGGTTACAGTTAGTTACGAGAATCGG TTGCCGTTCGTTAGTAGCATGTGGAACAAGATTGTCTTCTGCAACAGACGCTTTTACTGCTTGAGTTTAACAGGGTGGCTCGGTGTTTTCGACAATTCGG AAAGGACTTGGAATGTTCTTCCTGCCCCTCCACCGAGATGCCCCGAGAATGTCTTTGCGAAGAACTGGTGGAAGGGGAAATTCATGGCCGAGAGTGACGA AGGAAGCATCCTTGTCGTGTGCTCATGTTGCAGCGAGAATCCGGTCGTGTTTCGCTTCGACGAAAGAAACATGATCTGGGAAGAGATGAGAAGTCTGAAT GGATTGACGCTGTTTGCAAGTTCCTTGTCGTCTCATTCAAGAACTGACTTACCGGGGAACATGAGGAACAGTGTCTACTTCCCTAAAGTTCGTTACTTTG GGAAACGATGTGTATCTTATTCGCTCGATGATGGTCGATACTATCCTCGCAAGCAGTGTTACGACTGGGGCGGGCTAGATCCTTTCGCAAACATTTGGAT CGACCCTCCTGGCGACCTTTCGGGTTTTGTCGAAAGAGATAGCACCCTGCTGCCGTTTTGA
AA sequence Show only first row Show all	>Lus10022706 pacid=23178580 polypeptide=Lus10022706 locus=Lus10022706.g ID=Lus10022706.BGIv1.0 annot-version=v1.0 MAGRKRRKAKLSTETVTRRLTTDNSEEDASELHKTWSELPTDLLETVLSRLSFRDNIRASAVCKRWKLCAVSVRVARQPPWLMYFPKSSNLYELYDPARR KTYFMELPELSGSRVCHARAGWLLLYNPSTHHVFFFNPFSQEVVELPSFELSFQVVAFSGPPTSSGCVVLTLKHLNPTGVDISTCRPGSTEWVTVSYENR LPFVSSMWNKIVFCNRRFYCLSLTGWLGVFDNSERTWNVLPAPPPRCPENVFAKNWWKGKFMAESDEGSILVVCSCCSENPVVFRFDERNMIWEEMRSLN GLTLFASSLSSHSRTDLPGNMRNSVYFPKVRYFGKRCVSYSLDDGRYYPRKQCYDWGGLDPFANIWIDPPGDLSGFVERDSTLLPF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G57790			F-box family protein (.1)		Lus10022706 [exp]	0	1
AT1G51550			Kelch repeat-containing F-box ...		Lus10034827 [exp]	6.7	0.8775
AT1G68300			Adenine nucleotide alpha hydro...		Lus10034337 [exp]	7.5	0.8986
AT3G22430			unknown protein		Lus10041203 [exp]	8.5	0.8649
AT1G57790			F-box family protein (.1)		Lus10014208 [exp]	12.8	0.8410
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Lus10042080 [exp]	16.1	0.8405
AT5G11150		ATVAMP713	vesicle-associated membrane pr...		Lus10001492 [exp]	17.1	0.8361
AT2G14680		MEE13	maternal effect embryo arrest ...		Lus10010456 [exp]	21.0	0.8854
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10018843 [exp]	22.0	0.8838
AT4G27130			Translation initiation factor ...		Lus10015124 [exp]	22.4	0.8796
AT1G60420			DC1 domain-containing protein ...		Lus10029148 [exp]	23.2	0.8243

Compare expression of checked genes

Lus10022706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.