Plant FIBer expression Database

Lus10022708 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G36220 47 / 1e-06 unknown protein
AT3G52710 46 / 4e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014206
[exp]
200 / 4e-64 AT3G52710 176 / 2e-53 unknown protein
Lus10021354
[exp]
87 / 1e-20 AT3G52710 181 / 4e-55 unknown protein
Lus10017030
[exp]
86 / 7e-20 AT3G52710 164 / 8e-49 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G212800
[exp]
64 / 4e-12 AT3G52710 153 / 2e-44 unknown protein
Potri.016G079500
[exp]
55 / 3e-09 AT2G36220 140 / 1e-39 unknown protein
PFAM info
Representative CDS sequence
>Lus10022708 pacid=23178584 polypeptide=Lus10022708 locus=Lus10022708.g ID=Lus10022708.BGIv1.0 annot-version=v1.0
ATGTTCGGGTTGCCGAAGGCGCAGAACTCTTGCTTCGTCGATCCGAAGAACCGCCGGCATACCAAGGCTGGGAGCACGCATCTGTTCCCCAAGAGATCCG
CCTCCGCCGCGAAATCGTCGTCCTCCGTAGCGGAGCCTGGATCGCCGAAGGTATCGTGTATGGGGAGGGTGCGATCGAAGCGAGATCGGAACCGGAGGCT
ACGGAGCCGACAGCGATCCAAGCGATCTAACGACCCGGAGCTGAAGAGAGGAAAATCCGAACGCAGACGAGAAGAATCAGGATTCATCGCAAGCTTTCGA
GCAATTTTCAAGCCGTTTCTCAAATCGAAGCACTCCAAGACCGGAAACTCCGCCCCACTCCACAGAGACTCGTCGTCCTCGTCGAGAACAAGCGATGCAG
TTGCGACTTCAAGCGATATCAGGAATCGGCTTCCGGCTCAGAGAACCAGCGGCGGCGGAAGTGAAGTCCCTCCGTCGTTGGCGGCGGCGGGGAGTTTAGG
TGGGATGGCGAAGTTTTCTTCTGGGAGGAGATCTACAGAATGGGCAAACGGGATTGTCGACGTGGCGTGA
AA sequence
>Lus10022708 pacid=23178584 polypeptide=Lus10022708 locus=Lus10022708.g ID=Lus10022708.BGIv1.0 annot-version=v1.0
MFGLPKAQNSCFVDPKNRRHTKAGSTHLFPKRSASAAKSSSSVAEPGSPKVSCMGRVRSKRDRNRRLRSRQRSKRSNDPELKRGKSERRREESGFIASFR
AIFKPFLKSKHSKTGNSAPLHRDSSSSSRTSDAVATSSDIRNRLPAQRTSGGGSEVPPSLAAAGSLGGMAKFSSGRRSTEWANGIVDVA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G52710 unknown protein Lus10022708
[exp]
0 1
AT2G36220 unknown protein Lus10022709
[exp]
1.0 0.8944
AT5G56600 PRF3, PFN3 profilin 3 (.1.2) Lus10043040
[exp]
2.0 0.8438
AT1G11360 Adenine nucleotide alpha hydro... Lus10039730
[exp]
4.0 0.8146
Lus10017454
[exp]
4.2 0.8316
AT3G05500 Rubber elongation factor prote... Lus10029892
[exp]
4.6 0.7972
AT1G21380 Target of Myb protein 1 (.1) Lus10018948
[exp]
5.0 0.8059
AT2G44990 MAX3, CCD7, ATC... carotenoid cleavage dioxygenas... Lus10005653
[exp]
6.0 0.7702
AT2G46490 unknown protein Lus10019579
[exp]
8.9 0.7569
AT5G62930 SGNH hydrolase-type esterase s... Lus10027675
[exp]
9.8 0.7596
AT5G05840 Protein of unknown function (D... Lus10004669
[exp]
11.2 0.7496

Lus10022708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.