Plant FIBer expression Database

Lus10022709 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G36220 62 / 4e-12 unknown protein
AT3G52710 61 / 2e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014206
[exp]
162 / 3e-50 AT3G52710 176 / 2e-53 unknown protein
Lus10021354
[exp]
123 / 9e-35 AT3G52710 181 / 4e-55 unknown protein
Lus10017030
[exp]
114 / 3e-31 AT3G52710 164 / 8e-49 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G079500
[exp]
95 / 4e-24 AT2G36220 140 / 1e-39 unknown protein
Potri.006G212800
[exp]
86 / 9e-21 AT3G52710 153 / 2e-44 unknown protein
PFAM info
Representative CDS sequence
>Lus10022709 pacid=23178508 polypeptide=Lus10022709 locus=Lus10022709.g ID=Lus10022709.BGIv1.0 annot-version=v1.0
ATGCCGCAGGTAGATCTGGAGAGTCTGGTAGTATCAGTCTGCTCCGGTGGCGCATGCGACAGCAAAATCGCTTGCGAAACCCCCCCCCCCGCCGACGATG
TCAACAAAAACACCAATCAAGATCCGGAACTGGATCCGGAACTTCCGCCTGATTTTCCGCCCGAGTCGTTCTGGCTTTCCAAAGACGCGGAACTCGATTG
GCTCGATCGCAACGCCTTCATGGCGCGGCAAGATTCCACCAAGGGCAGCTCCAATTCGACGAACCTGAACCATGGTGTTTACCCGACGACGCCGGCGAAC
TCGTCGCACTCGGCGCGGTACGCGAATTTGAGATTGCCCGGCCGAGTCTGTCTGGCTTTCCAAAGACGCGGAACTCGATTGGCTCGATCGCAACGCCTTC
ATGGCGCGGCAAGATTCCACCAAGGGCAGCTCCAATTCGACGAACCTGAACCATAG
AA sequence
>Lus10022709 pacid=23178508 polypeptide=Lus10022709 locus=Lus10022709.g ID=Lus10022709.BGIv1.0 annot-version=v1.0
MPQVDLESLVVSVCSGGACDSKIACETPPPADDVNKNTNQDPELDPELPPDFPPESFWLSKDAELDWLDRNAFMARQDSTKGSSNSTNLNHGVYPTTPAN
SSHSARYANLRLPGRVCLAFQRRGTRLARSQRLHGAARFHQGQLQFDEPEP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G36220 unknown protein Lus10022709
[exp]
0 1
AT3G52710 unknown protein Lus10022708
[exp]
1.0 0.8944
AT1G71380 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL ... Lus10025880
[exp]
2.8 0.8239
AT2G25290 Phox1 Phox1, Octicosapeptide/Phox/Be... Lus10001947
[exp]
3.2 0.8106
AT1G07750 RmlC-like cupins superfamily p... Lus10005438
[exp]
3.9 0.7874
AT1G45688 unknown protein Lus10010232
[exp]
6.0 0.8337
AT5G14680 Adenine nucleotide alpha hydro... Lus10008772
[exp]
6.2 0.7769
AT2G44990 MAX3, CCD7, ATC... carotenoid cleavage dioxygenas... Lus10005653
[exp]
6.5 0.7721
AT2G46710 Rho GTPase activating protein ... Lus10005998
[exp]
6.6 0.8370
AT2G36710 Pectin lyase-like superfamily ... Lus10027737
[exp]
9.4 0.8055
AT2G45140 PVA12 plant VAP homolog 12 (.1) Lus10008512
[exp]
11.7 0.7705

Lus10022709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.