Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52720 218 / 3e-70 CAH1, ATACA1, ACA1 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) AT1G08080 199 / 4e-63 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) AT4G20990 176 / 5e-54 ATACA4, ACA4 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) AT1G08065 176 / 7e-54 ATACA5, ACA5 alpha carbonic anhydrase 5 (.1) AT5G04180 167 / 2e-50 ATACA3, ACA3 alpha carbonic anhydrase 3 (.1) AT2G28210 155 / 2e-46 ATACA2 alpha carbonic anhydrase 2 (.1) AT4G21000 132 / 4e-37 ATACA6, ACA6 A. THALIANA ALPHA CARBONIC ANHYDRASE 6, alpha carbonic anhydrase 6 (.1) AT5G56330 122 / 2e-32 ATACA8, ACA8 A. THALIANA ALPHA CARBONIC ANHYDRASE 8, alpha carbonic anhydrase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021356 [exp] 310 / 2e-106 AT3G52720 231 / 6e-75 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Lus10017033 [exp] 305 / 4e-104 AT3G52720 231 / 4e-75 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Lus10018017 [exp] 214 / 1e-67 AT4G20990 240 / 4e-78 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10014205 [exp] 198 / 2e-64 AT1G08080 95 / 9e-25 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10042030 [exp] 200 / 3e-62 AT4G20990 313 / 9e-107 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10021454 [exp] 192 / 2e-60 AT1G08080 300 / 1e-102 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016105 [exp] 191 / 8e-60 AT1G08080 333 / 1e-115 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10021455 [exp] 190 / 2e-59 AT1G08080 343 / 1e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10042013 [exp] 187 / 5e-58 AT4G20990 224 / 2e-72 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G079600 [exp] 253 / 5e-84 AT3G52720 271 / 8e-91 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.006G212900 [exp] 247 / 8e-82 AT3G52720 261 / 5e-87 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.009G010200 [exp] 189 / 5e-59 AT1G08080 342 / 3e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.004G212800 [exp] 189 / 6e-59 AT1G08080 347 / 3e-121 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.016G043700 [exp] 186 / 1e-57 AT4G20990 306 / 4e-105 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047500 [exp] 184 / 4e-57 AT4G20990 276 / 5e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047400 [exp] 184 / 4e-57 AT4G20990 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G121900 [exp] 174 / 4e-53 AT1G08080 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00194 [flax] [poplar] Carb_anhydrase Eukaryotic-type carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Lus10022710 pacid=23178575 polypeptide=Lus10022710 locus=Lus10022710.g ID=Lus10022710.BGIv1.0 annot-version=v1.0 ATGGGCACTTCTAACTTGGGAGCCTTCTCTTTGGCCGGTCTAGTCATTATTCTTTCTCTTGCTCTCGGCGATGTCGATGCCGCCGATGCTCCAGTTACCT ATGATTTCAAGAGTGGGCCAAAAGGGCCGGAAAACTGGGCGAGTTTGCACCCGTTGTTCGAGAAATGCGGATCGGGAAAATCTCAGTCACCGATCGACAT CAGCGGGAAGGATGTTGTTAAAAACGAAAAGCTTGGGCCATTGGAGGGTGATTACAAACCTGTCCAGGCCACTCTTGTTAATACCGGTCGCAACATCATC ATTCATTTTGATGATCCGAAAGCCGGAGAGTTGAAGATAGATGGGAAAGTTTACAAGCTGAAGCAAATCCATTGGCATACTCCTTCCGAGCACACCTTCA ATGGCACAGTGTACCCTTTGGAGCTTCACGTAGTTCACAAGGCCGACGATGGGAGCTCCGCCGTTATAGGTGTTCTCTACGACTATGGTGATAAGGAGGA CGGAATCCTTAAAAAGATCAAAGACGAATTGGCGGAGCTAGCGCAGGACAAATGCTCGCCGGAGGAAGAATCCCAAGTACCAATCAAGAAATTTGAGTTC AAGATGTTGAAGGATAGAGCTCCCAAGTACTACAGATACGAAGGCTCCCTTACTTTCCCTCCATGCACCGAGGGTGTCGTTTGGAACGTCATTGCCAAGG TGAGAATTGCGACCAAGGAACAAGTGAAATCAATGACGGATCTGTTAGATAAGGATTTCAAGATGAACTCTAGGCCGGTGCAGCCTCTCAATGGAAGAAA GGTTGAGGTTTACAAACAGCACAAAGATTAA
AA sequence Show only first row Show all	>Lus10022710 pacid=23178575 polypeptide=Lus10022710 locus=Lus10022710.g ID=Lus10022710.BGIv1.0 annot-version=v1.0 MGTSNLGAFSLAGLVIILSLALGDVDAADAPVTYDFKSGPKGPENWASLHPLFEKCGSGKSQSPIDISGKDVVKNEKLGPLEGDYKPVQATLVNTGRNII IHFDDPKAGELKIDGKVYKLKQIHWHTPSEHTFNGTVYPLELHVVHKADDGSSAVIGVLYDYGDKEDGILKKIKDELAELAQDKCSPEEESQVPIKKFEF KMLKDRAPKYYRYEGSLTFPPCTEGVVWNVIAKVRIATKEQVKSMTDLLDKDFKMNSRPVQPLNGRKVEVYKQHKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Lus10022710 [exp]	0	1
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Lus10006943 [exp]	9.7	0.9991
AT3G12880			Plant invertase/pectin methyle...		Lus10031197 [exp]	12.1	0.9809
AT1G75880		EXL1	SGNH hydrolase-type esterase s...		Lus10034541 [exp]	12.2	0.9809
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10002191 [exp]	12.5	0.9759
AT3G42880			Leucine-rich repeat protein ki...		Lus10037688 [exp]	13.7	0.9991
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008639 [exp]	17.7	0.9978
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10009469 [exp]	20.6	0.9977
					Lus10014857 [exp]	23.1	0.9976
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013823 [exp]	25.3	0.9976
AT2G48030			DNAse I-like superfamily prote...		Lus10027979 [exp]	26.4	0.9606

Compare expression of checked genes

Lus10022710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.