Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05490 88 / 4e-18 SYN1 BP5, SYN1 BP2, SYN1., DIF1, ATREC8 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022665 [exp] 420 / 6e-139 AT2G30110 748 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10014204 [exp] 364 / 3e-118 AT5G05490 314 / 3e-98 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G072300 [exp] 126 / 2e-30 AT5G05490 428 / 1e-142 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0157 [flax] [poplar] Kleisin PF04824 [flax] [poplar] Rad21_Rec8 Conserved region of Rad21 / Rec8 like protein
Representative CDS sequence Show only first row Show all	>Lus10022711 pacid=23178658 polypeptide=Lus10022711 locus=Lus10022711.g ID=Lus10022711.BGIv1.0 annot-version=v1.0 ATGAATTTCCAGCGTGCATTCTATATTGCTGTGAACAAAGATCTCACAGATACAATTCAGAAGGTTGCTGCCGCTTTCGACTGCAACCATCTTCTGGGTA CGAAGACAAAAATCCGTGCTGATCTAGGTTTGAAGTACAAGCATTCTGTAATTGATCATCGTGATGCATTGCAGAGATGCTTCCGTTCAGACCCTTTGAT GAATTCGCACTCACTGAGGATTTTCCGGCGGCACTCCTTCATCCTTGGCGAGAACGCCCCGAGCCGTCATCAGGTAGTTCCAGTCACCATCGCCGACATC GACATCGACGACGGCGAGAGCAAGAGAAAGAAGAATGGCTTGGCTAGACCGGCCAAAGAGAAGACTCTCAGTGTTAGAGAAACGTTTTTGAGACTCTTTG CTGTGGACTCATTCCAATTCAGTTGTGCTGAACTTACTTGTCTGTTACTGCAGCAACTTGAAGATGTAGACGAGGCTTATTATACCTATGACGCTATGGA AGAAGATGGGGCTGGGAATATGCATCATCAAGCTGATCCTGAAAACATTACACTTACCGATCGCTTTGATCCACGTCAAGTTGACACTGAAATGTATGAT CGCTTTGAAAGATTTGACATTGATGGAGACGGGGATACAAATGTGAACATGACTTTTGAAGACGAAACAGATTTCCCTACGACTCATATACCGGCCCGGC CGCCACCTCCACCCCGGCTCATGATGCTGAAGAAGGTCTACTTGAAGATGCTTATACTTATTTGCACTACAGAGATTCCAGACCAGCATTTCGGAAACCA TGTAAATCAGAAGCCCCAAGAATCAAATGGAGAAGGACAGGTTCAAGGAGTAATCAGAAGGAAAAGAAAGAGAAGAGCAGGAGCTGGAATAATAGATTAT GAGACAATAGTCGTTCCTAGTGATCTGTACCAGTCATGGCTTCAAGATGCTTCTGACATCTCCTCAAGGAGAAGCAGAAAGAAGAAGAACTTTGAAGACT TTCAGAATAATGTTGGCTCTCAGTCGGTTGGTACTTCAGTCGAGAGGCCAGTAGCACCAGTTGGCAGCGTGGAAAACTTGATTGGCAAACTGGAAGCCAA CCTTCCTTTCCGTGATGAGTTTGAAGTCAACTTTGACAACAACAAGATGAAAGGAAAAGAACCAATTTTCACAACTCCTGTCGATGCCGGGAATGGATCC AGATTCGCACATAGTTCAAGTTCTGGACCGCAACATCACTCTGACAGGAACTCTGGACAACGGAGTGGAAGCAGTCTTCAATCAGTTCCTGAGGACATGT CATGGGTTCCAGATCCAGAACTGCAGACTGTACCCGAGAAGGACCCGACACCTGAGCAAGAGCTGATAGTGGAAACTGGACCTACACAGACTCAGCCACC AACAATCCCGCAGCAACTTGATCCTATGACTGAAGCTATCCGGATCCATCTGAAAGCCCATTTCGAAGCACCAGGAGCTCCTCCATCAGAATCCCTCAAC AATCTCGCAACAGGATTGAACCGCAGAAGAGCAGCTATGCTATTCCAGCAAGGTGGTGAACTAAAACTTGTTCTTTCATCTCTTTGCACAGTTCTTGCAA CACGAGGCTCCATCAAAGTCGACCAGACTGAGCCCTACGGCCACATCAAGATCTCGAATGGAGCAGCGATATGA
AA sequence Show only first row Show all	>Lus10022711 pacid=23178658 polypeptide=Lus10022711 locus=Lus10022711.g ID=Lus10022711.BGIv1.0 annot-version=v1.0 MNFQRAFYIAVNKDLTDTIQKVAAAFDCNHLLGTKTKIRADLGLKYKHSVIDHRDALQRCFRSDPLMNSHSLRIFRRHSFILGENAPSRHQVVPVTIADI DIDDGESKRKKNGLARPAKEKTLSVRETFLRLFAVDSFQFSCAELTCLLLQQLEDVDEAYYTYDAMEEDGAGNMHHQADPENITLTDRFDPRQVDTEMYD RFERFDIDGDGDTNVNMTFEDETDFPTTHIPARPPPPPRLMMLKKVYLKMLILICTTEIPDQHFGNHVNQKPQESNGEGQVQGVIRRKRKRRAGAGIIDY ETIVVPSDLYQSWLQDASDISSRRSRKKKNFEDFQNNVGSQSVGTSVERPVAPVGSVENLIGKLEANLPFRDEFEVNFDNNKMKGKEPIFTTPVDAGNGS RFAHSSSSGPQHHSDRNSGQRSGSSLQSVPEDMSWVPDPELQTVPEKDPTPEQELIVETGPTQTQPPTIPQQLDPMTEAIRIHLKAHFEAPGAPPSESLN NLATGLNRRRAAMLFQQGGELKLVLSSLCTVLATRGSIKVDQTEPYGHIKISNGAAI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05490		SYN1 BP5, SYN1 ...	SYNAPTIC 1, DETERMINATE, INFER...		Lus10022711 [exp]	0	1
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10040795 [exp]	1.0	0.8646
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10024908 [exp]	1.7	0.8117
AT1G19270		DA1	DA1 (.1)		Lus10032736 [exp]	4.5	0.7972
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10021556 [exp]	7.7	0.8451
AT5G41130			Esterase/lipase/thioesterase f...		Lus10041529 [exp]	18.2	0.7145
AT4G35310		CPK5, ATCPK5	calmodulin-domain protein kina...		Lus10022986 [exp]	22.0	0.7354
AT1G05510			Protein of unknown function (D...		Lus10021483 [exp]	22.6	0.7599
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Lus10021310 [exp]	27.1	0.7179
					Lus10037041 [exp]	35.7	0.7920
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10005428 [exp]	43.4	0.7486

Compare expression of checked genes

Lus10022711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.