Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10130 367 / 8e-128 SOUL heme-binding family protein (.1) AT2G37970 98 / 4e-24 SOUL-1 SOUL heme-binding family protein (.1) AT5G20140 97 / 1e-22 SOUL heme-binding family protein (.1.2) AT1G17100 55 / 1e-08 SOUL heme-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014203 [exp] 484 / 1e-174 AT3G10130 290 / 4e-98 SOUL heme-binding family protein (.1) Lus10017193 [exp] 102 / 4e-26 AT2G37970 273 / 4e-94 SOUL heme-binding family protein (.1) Lus10000227 [exp] 90 / 2e-21 AT2G37970 222 / 1e-73 SOUL heme-binding family protein (.1) Lus10013345 [exp] 87 / 3e-19 AT5G20140 464 / 8e-164 SOUL heme-binding family protein (.1.2) Lus10027752 [exp] 84 / 7e-19 AT2G37970 275 / 2e-94 SOUL heme-binding family protein (.1) Lus10001847 [exp] 76 / 3e-15 AT5G20140 330 / 3e-111 SOUL heme-binding family protein (.1.2) Lus10019445 [exp] 71 / 1e-13 AT5G20140 422 / 3e-148 SOUL heme-binding family protein (.1.2) Lus10000106 [exp] 65 / 2e-12 AT2G37970 207 / 3e-68 SOUL heme-binding family protein (.1) Lus10001247 [exp] 50 / 7e-07 AT1G17100 142 / 3e-42 SOUL heme-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G098500 [exp] 355 / 1e-123 AT3G10130 295 / 7e-100 SOUL heme-binding family protein (.1) Potri.016G109400 [exp] 100 / 3e-25 AT2G37970 260 / 1e-88 SOUL heme-binding family protein (.1) Potri.018G073501 [exp] 93 / 3e-21 AT5G20140 528 / 0.0 SOUL heme-binding family protein (.1.2) Potri.001G379000 [exp] 59 / 5e-10 AT1G17100 275 / 3e-94 SOUL heme-binding family protein (.1) Potri.015G080000 [exp] 56 / 5e-09 AT1G17100 153 / 2e-46 SOUL heme-binding family protein (.1) Potri.012G088400 [exp] 47 / 5e-06 AT1G17100 155 / 3e-47 SOUL heme-binding family protein (.1) Potri.010G044200 [exp] 47 / 5e-06 AT1G17100 119 / 4e-33 SOUL heme-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF04832 [flax] [poplar] SOUL SOUL heme-binding protein
Representative CDS sequence Show only first row Show all	>Lus10022712 pacid=23178534 polypeptide=Lus10022712 locus=Lus10022712.g ID=Lus10022712.BGIv1.0 annot-version=v1.0 ATGTCTCTCTGCAAGATTTCTCCGATGACCCACTACTCACCGTCGTCGAATTTTCCTGGTGTCCTCACTCCATCGCTTCGCAACCCAGTCTTTTTGCCAC TCAAAGTGACGATGCGCCTGTCCACCGACAGAGCCACCGCATCCGCTCCGCAGCAGAAAAGAGCCGTCTCCGGTTTGGAGTCTCGAGTCTCCCTCATCTT CGCTCTTGCTGCTCAGACGAATAACATTTCTCAGCGATTTCTGTTTGATTTGGCGAGCGAGACTGCCAAGTACGTGTTCCCGAAGAGGTTCGAGAGCCGG AATTTGGAGGAGGCGTTGATGTCAGTTCCTGATCTCGAATCTGTCAAGTTCAAGGTCTTGAGCAGAAGAGACGAGTACGAGATACGAGAGGTCGAGCCTT ACTTCATAGCAGAAACAACAATGTCCGGGAAGACTGGATTCGATTTCAACGGTGCTTCGAAATCGTTCAATGCATTAGCTGAGTACTTGTTTGGTAAGAA TACAACACAGGAGAAGATGGAAATGACGACACCAGTTGTTACGAGTAAGGCTCGGTCTGCAGCTGGAGAGAAAATGGAGATGACTACTCCTGTGATAACC ACAAAGGCCGAAGATCAGGAGAAGTGGCGGATGTCATTTATCTTACCGTCCAAGTACGGATCCAACCTGCCATCGCCTAAAGATCCATCAGTCAGTATCA AGGAGGTGCCGAGGAAAGTTGTAGCAGTTGTTGCTTTCTCGGGGTTTCTTAGCGATGAAGAAGTTAAACAACGAGAAGTTAAGCTAAGAGCTGCGTTACG AAATGACAAACAATACGTAGTGAAACAAGGTGCTTCAGTTGAAGTTGCACAGTACAATCCACCTTTCACTCTCCCGTTTAACCGTCGGAACGAGATTGCG ATAGAGCTGGAAAGGAAGGAAGATGCAGCTGCGTAA
AA sequence Show only first row Show all	>Lus10022712 pacid=23178534 polypeptide=Lus10022712 locus=Lus10022712.g ID=Lus10022712.BGIv1.0 annot-version=v1.0 MSLCKISPMTHYSPSSNFPGVLTPSLRNPVFLPLKVTMRLSTDRATASAPQQKRAVSGLESRVSLIFALAAQTNNISQRFLFDLASETAKYVFPKRFESR NLEEALMSVPDLESVKFKVLSRRDEYEIREVEPYFIAETTMSGKTGFDFNGASKSFNALAEYLFGKNTTQEKMEMTTPVVTSKARSAAGEKMEMTTPVIT TKAEDQEKWRMSFILPSKYGSNLPSPKDPSVSIKEVPRKVVAVVAFSGFLSDEEVKQREVKLRAALRNDKQYVVKQGASVEVAQYNPPFTLPFNRRNEIA IELERKEDAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10130			SOUL heme-binding family prote...		Lus10022712 [exp]	0	1
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Lus10032727 [exp]	2.4	0.8994
AT5G13720			Uncharacterised protein family...		Lus10019743 [exp]	2.6	0.9213
AT3G27110			Peptidase family M48 family pr...		Lus10035210 [exp]	4.6	0.8903
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10026322 [exp]	7.5	0.9052
AT2G33580			Protein kinase superfamily pro...		Lus10041171 [exp]	7.7	0.9111
AT3G27110			Peptidase family M48 family pr...		Lus10032044 [exp]	8.1	0.8779
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10004485 [exp]	8.1	0.8704
AT4G31530			NAD(P)-binding Rossmann-fold s...		Lus10009715 [exp]	11.7	0.9028
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10005367 [exp]	11.8	0.8587
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10033395 [exp]	14.1	0.8893

Compare expression of checked genes

Lus10022712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.