Plant FIBer expression Database

Lus10022713 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G15770 206 / 3e-69 ATGNA1 glucose-6-phosphate acetyltransferase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014202
[exp]
306 / 2e-108 AT5G15770 206 / 2e-69 glucose-6-phosphate acetyltransferase 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G086400
[exp]
248 / 4e-85 AT5G15770 219 / 9e-74 glucose-6-phosphate acetyltransferase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0257 Acetyltrans PF00583 Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence
>Lus10022713 pacid=23178561 polypeptide=Lus10022713 locus=Lus10022713.g ID=Lus10022713.BGIv1.0 annot-version=v1.0
ATGCAGGATGATAACTCATCCATTACCAATCAAACCTTCCAAGTACGGAAATTGCAGATATTAGACAAAGCCAAAGGCTTCATCGAGCTCTTACAGCAGC
TCAGCGTCTGCGATTCCGTCTCGGACAAGGATTTCGAGGAACGGTTCCGCGAGCTTACTTCCTACGGGGACGACCATCTCATCTGTGTAATCGAAGACGA
CAAAACAGGGAAGATAGTAGCCACGGGCTGTGTGTTTGTGGAGAAGAAGTTCTTGAGGAACTGTGGCAAAGTAGGGCACATTGAGGATGTAGTCGTCGAT
TCCAGCGCCAGAGGGTTGCACCTAGGGAAGAAAATCGTGGATTTCCTCACGGATCACGCTCGTTCCAACGGTTGCTACAAGGTGATCCTGGATTGCAGTG
ATGGTAACAAGGAGTTCTACGAGAAGTGCGGGTTCAAGCAGAAGGAGATCCAGATGGTTCAATATTTCGTCTGA
AA sequence
>Lus10022713 pacid=23178561 polypeptide=Lus10022713 locus=Lus10022713.g ID=Lus10022713.BGIv1.0 annot-version=v1.0
MQDDNSSITNQTFQVRKLQILDKAKGFIELLQQLSVCDSVSDKDFEERFRELTSYGDDHLICVIEDDKTGKIVATGCVFVEKKFLRNCGKVGHIEDVVVD
SSARGLHLGKKIVDFLTDHARSNGCYKVILDCSDGNKEFYEKCGFKQKEIQMVQYFV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G15770 ATGNA1 glucose-6-phosphate acetyltran... Lus10022713
[exp]
0 1
AT5G05780 RPN8A, AE3, ATH... ASYMMETRIC LEAVES ENHANCER 3, ... Lus10027775
[exp]
12.2 0.8540
AT3G62390 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 ... Lus10002430
[exp]
23.7 0.8390
AT5G47520 AtRABA5a RAB GTPase homolog A5A (.1) Lus10039051
[exp]
26.5 0.7843
AT3G19820 CBB1, EVE1, DW1... ENHANCED VERY-LOW-FLUENCE RESP... Lus10010215
[exp]
26.8 0.8226
AT3G26330 CYP71B37 "cytochrome P450, family 71, s... Lus10028926
[exp]
35.6 0.8144
AT2G43360 BIOB, BIO2 BIOTIN AUXOTROPH B, BIOTIN AUX... Lus10027018
[exp]
42.7 0.8268
AT3G04560 unknown protein Lus10022011
[exp]
43.6 0.8087
AT2G18290 EMB2783, APC10 EMBRYO DEFECTIVE 2783, anaphas... Lus10028308
[exp]
44.4 0.7805
AT2G05990 ENR1, MOD1 MOSAIC DEATH 1, ENOYL-ACP REDU... Lus10004186
[exp]
49.4 0.8093
AT3G53850 Uncharacterised protein family... Lus10024355
[exp]
50.0 0.8203

Lus10022713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.