Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52740 77 / 2e-18 unknown protein AT3G44450 59 / 9e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014197 [exp] 222 / 3e-75 AT3G52740 87 / 2e-22 unknown protein Lus10021366 [exp] 89 / 9e-23 AT3G52740 91 / 1e-23 unknown protein Lus10017046 [exp] 87 / 3e-22 AT3G52740 94 / 6e-25 unknown protein Lus10004872 [exp] 67 / 1e-14 AT3G52740 102 / 6e-29 unknown protein Lus10020614 [exp] 62 / 6e-13 AT3G52740 103 / 2e-29 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G202900 [exp] 77 / 2e-18 AT3G52740 100 / 1e-27 unknown protein Potri.009G163900 [exp] 74 / 9e-18 AT3G52740 101 / 7e-29 unknown protein Potri.009G164000 [exp] 72 / 2e-16 AT3G52740 95 / 2e-25 unknown protein Potri.004G203000 [exp] 68 / 6e-15 AT3G52740 90 / 1e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022717 pacid=23178630 polypeptide=Lus10022717 locus=Lus10022717.g ID=Lus10022717.BGIv1.0 annot-version=v1.0 ATGAAACCTCCTGAAGAAGAAGAAGACCCATCTGAACCAATAACACCAGAAGAAGCTCATTCACAGCTAGTTCTTTCATGTAGCCACCATACCATGGATA GTCAAGCCACCAAGCTAGACTGTAGCACCAATGGCGGCAGGATAGAAGCCGAAGTCGAGGAACCCAGTGACGGAACCAGGGGCGGGGGAACCCGGGCTGT CCTAGAACGCCAAACCCGGATTCCGATCATCTTGGAACCTGCAACCGCGGAGGAATTTCAGGGACGTTGGTGTGGGAGAGAGAAGCTGAAGAAGCGCAGG ATGGAAGTTGCAGGGAAGGTATGGATTCCAGAGACTTGGGAACAGGAAAATCTGCTTAAGAATTGGATTGATTGTTCTGCTTTTGATGCTTCATTAATTT CTAATTCATCTGCTCGAGATGCTCTGGTTCAGCAAGGTTTGAGTTCATGTAAAACACCTCCTCTAATCCCAGGGGATTAA
AA sequence Show only first row Show all	>Lus10022717 pacid=23178630 polypeptide=Lus10022717 locus=Lus10022717.g ID=Lus10022717.BGIv1.0 annot-version=v1.0 MKPPEEEEDPSEPITPEEAHSQLVLSCSHHTMDSQATKLDCSTNGGRIEAEVEEPSDGTRGGGTRAVLERQTRIPIILEPATAEEFQGRWCGREKLKKRR MEVAGKVWIPETWEQENLLKNWIDCSAFDASLISNSSARDALVQQGLSSCKTPPLIPGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52740			unknown protein		Lus10022717 [exp]	0	1
AT4G37220			Cold acclimation protein WCOR4...		Lus10027945 [exp]	1.4	0.8953
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10026433 [exp]	2.0	0.8653
					Lus10010603 [exp]	2.4	0.8704
AT1G20925			Auxin efflux carrier family pr...		Lus10030715 [exp]	2.4	0.8953
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10003195 [exp]	4.2	0.8644
AT2G23945			Eukaryotic aspartyl protease f...		Lus10002275 [exp]	5.1	0.8096
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10010097 [exp]	7.1	0.8645
AT3G18715		IDL4	inflorescence deficient in abs...		Lus10033523 [exp]	8.0	0.7917
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005879 [exp]	9.2	0.8527
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	12.6	0.8433

Compare expression of checked genes

Lus10022717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.