Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36270 155 / 3e-43 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G41070 133 / 2e-36 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G49720 112 / 9e-28 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT3G19290 108 / 3e-26 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT3G56850 106 / 5e-26 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT3G44460 104 / 4e-25 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G34000 103 / 3e-24 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT1G45249 96 / 1e-21 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT5G44080 84 / 7e-18 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G03970 69 / 3e-13 bZIP GBF4 G-box binding factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017049 [exp] 332 / 9e-112 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10014194 [exp] 286 / 8e-94 AT2G36270 342 / 2e-114 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10021369 [exp] 219 / 4e-68 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008928 [exp] 105 / 7e-27 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1) Lus10028889 [exp] 108 / 8e-27 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10014066 [exp] 101 / 1e-23 AT3G19290 345 / 1e-115 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10006489 [exp] 100 / 3e-23 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10008929 [exp] 97 / 9e-23 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1) Lus10009755 [exp] 96 / 1e-21 AT1G45249 283 / 3e-91 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083000 [exp] 191 / 3e-57 AT2G36270 313 / 1e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.014G028200 [exp] 113 / 8e-28 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.002G125400 [exp] 108 / 6e-26 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.009G101200 [exp] 107 / 1e-25 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.001G220700 [exp] 103 / 2e-25 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1) Potri.004G140600 [exp] 105 / 3e-25 AT4G34000 321 / 8e-106 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.010G248300 [exp] 103 / 5e-25 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.016G024000 [exp] 102 / 8e-25 AT3G56850 241 / 4e-79 ABA-responsive element binding protein 3 (.1) Potri.006G025800 [exp] 99 / 1e-23 AT3G56850 271 / 7e-91 ABA-responsive element binding protein 3 (.1) Potri.010G248100 [exp] 100 / 2e-23 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10022720 pacid=23178611 polypeptide=Lus10022720 locus=Lus10022720.g ID=Lus10022720.BGIv1.0 annot-version=v1.0 ATGGGGGATCAAGAAATGAACTCCAACGGCGAAGTGGAATCGGCATTGCAGCTGGACAATCAATGCAACAACAACAAGAGCAACAATCCATTTCCTTCAC TGGGAAGGCAATCGTCAATTTACTCCCTCACTCTCGACGAATTCCAGCACACGCTATGCGGGGAAGGGGGGAAGAATTTCGGGTCGATGAAAATGGACGA GTTCCTCAACAGCATCTGGACTGCCGAGGAGAATCAGCATCCAAATCCGGCGGCGGGAGCGAGTGTTTCACACGCGCCGCTGCCGGGCGGGGGAAGTAAT GGCTGTGGTGGGTCAGGGGATCATCCGTCGGGTAAAGGGATAGCGAAGCAGCCTAGCTTGCCGAGGCAGGGGTCGCTTACTCTGCCGGAAAAGCTCTGTA GGAAGACGGTGGACGAGGTCTGGTCGGAGATTCACAGCGGGAACAGGAAATTCGGCGGCGGACAGAGGAAGAGCGGCGATAATAATGAGGCGAATTCGAA TTCAAATTCTCAGGTGAATGTTAGGAATAATTCCGAGTCTACCCCTCGGCAGCCGACTTTTGGGGAGATGACGCTCGAGGATTTCTTGATTAAAGCAGGG GTAGTTCGGGAACAACAATGCGGTGGTGGCGGCGTCGGCTATACGCCCCCTCCTCCTCCGCCTTCGCAGTCGTTGCCGGTGGTCGGACCGGTAAGTCCGG TTTCGTCCGATGGGATGGCGGCAGCGGCAAACATTGACGTCGTTGGGAATCATTACGGGATGGATATGAGCGGGTTGAGAGGGCGGAAGAGGATAATCGA CGGGCCAGTAGAGAAAGTGGTCGAGCGCCGACAGCGACGGATGATCAAGAACCGGGAATCCGCCGCCAGGTCTCGAGCTAGGAAGCAGGCGTATACCGTC GAGTTAGAAGCAGAATTGAACCAGTTAAAAGAGGAGAATAGGCAACTGAAGCAAGCACTAGCTGAGATGGAAAGGAAGAGAAAGCAACAGCTTTCGTGTG GTGCAGTACCTCGAGGAAATGAGATCGAAGGGACAGAGCAAGGCGCGGGAGAAGCTGATGCTGATGAGGAGGAATTTGAGTTGTCAATTATGATCCAGGA TGAGGACACATAG
AA sequence Show only first row Show all	>Lus10022720 pacid=23178611 polypeptide=Lus10022720 locus=Lus10022720.g ID=Lus10022720.BGIv1.0 annot-version=v1.0 MGDQEMNSNGEVESALQLDNQCNNNKSNNPFPSLGRQSSIYSLTLDEFQHTLCGEGGKNFGSMKMDEFLNSIWTAEENQHPNPAAGASVSHAPLPGGGSN GCGGSGDHPSGKGIAKQPSLPRQGSLTLPEKLCRKTVDEVWSEIHSGNRKFGGGQRKSGDNNEANSNSNSQVNVRNNSESTPRQPTFGEMTLEDFLIKAG VVREQQCGGGGVGYTPPPPPPSQSLPVVGPVSPVSSDGMAAAANIDVVGNHYGMDMSGLRGRKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTV ELEAELNQLKEENRQLKQALAEMERKRKQQLSCGAVPRGNEIEGTEQGAGEADADEEEFELSIMIQDEDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10022720 [exp]	0	1
AT2G46640			unknown protein		Lus10005993 [exp]	1.0	0.9417
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024716 [exp]	3.5	0.8942
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024577 [exp]	3.6	0.8699
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006307 [exp]	3.9	0.8939
AT1G24110			Peroxidase superfamily protein...		Lus10004234 [exp]	4.0	0.8811
AT3G05170			Phosphoglycerate mutase family...		Lus10024659 [exp]	4.2	0.9112
AT3G47430		PEX11B	peroxin 11B (.1)		Lus10027213 [exp]	4.2	0.8899
AT4G39480		CYP96A9	"cytochrome P450, family 96, s...		Lus10018161 [exp]	4.2	0.9180
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10028822 [exp]	5.8	0.8677
AT3G14880			unknown protein		Lus10039193 [exp]	7.2	0.8374

Compare expression of checked genes

Lus10022720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.