Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10080 82 / 2e-19 RmlC-like cupins superfamily protein (.1) AT1G09560 50 / 8e-08 GLP5 germin-like protein 5 (.1) AT1G72610 45 / 5e-06 ATGER1, GLP1 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) AT5G38910 40 / 0.0003 RmlC-like cupins superfamily protein (.1) AT3G04200 39 / 0.0007 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014192 [exp] 237 / 7e-80 AT3G10080 272 / 7e-93 RmlC-like cupins superfamily protein (.1) Lus10035279 [exp] 49 / 3e-07 AT5G39160 244 / 2e-82 RmlC-like cupins superfamily protein (.1.2.3) Lus10000622 [exp] 49 / 4e-07 AT5G39130 307 / 7e-107 RmlC-like cupins superfamily protein (.1) Lus10015128 [exp] 48 / 9e-07 AT3G05950 238 / 7e-80 RmlC-like cupins superfamily protein (.1) Lus10035280 [exp] 45 / 6e-06 AT3G05950 252 / 2e-85 RmlC-like cupins superfamily protein (.1) Lus10003267 [exp] 45 / 1e-05 AT5G39130 257 / 4e-87 RmlC-like cupins superfamily protein (.1) Lus10006538 [exp] 44 / 1e-05 AT5G39120 313 / 3e-109 RmlC-like cupins superfamily protein (.1) Lus10042616 [exp] 44 / 2e-05 AT5G61750 226 / 3e-75 RmlC-like cupins superfamily protein (.1) Lus10032017 [exp] 43 / 6e-05 AT3G05950 252 / 5e-84 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G238200 [exp] 79 / 3e-18 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.008G020800 [exp] 64 / 1e-12 AT3G10080 263 / 7e-90 RmlC-like cupins superfamily protein (.1) Potri.013G051800 [exp] 59 / 8e-11 AT3G05950 245 / 8e-83 RmlC-like cupins superfamily protein (.1) Potri.013G051600 [exp] 57 / 4e-10 AT3G05950 296 / 1e-102 RmlC-like cupins superfamily protein (.1) Potri.013G051700 [exp] 57 / 4e-10 AT3G05950 298 / 2e-103 RmlC-like cupins superfamily protein (.1) Potri.013G063101 [exp] 46 / 2e-06 AT5G39130 238 / 2e-80 RmlC-like cupins superfamily protein (.1) Potri.013G062950 [exp] 46 / 4e-06 AT5G39130 284 / 6e-98 RmlC-like cupins superfamily protein (.1) Potri.013G063100 [exp] 46 / 4e-06 AT5G39130 284 / 6e-98 RmlC-like cupins superfamily protein (.1) Potri.013G064100 [exp] 46 / 4e-06 AT5G39130 282 / 5e-97 RmlC-like cupins superfamily protein (.1) Potri.013G063001 [exp] 46 / 4e-06 AT5G39130 284 / 6e-98 RmlC-like cupins superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022721 pacid=23178507 polypeptide=Lus10022721 locus=Lus10022721.g ID=Lus10022721.BGIv1.0 annot-version=v1.0 ATGATCAATATCAAGTCTCCTCCTCATCAAAACAACTTCCTTGGAGGTCGACCCGAGCGCCTTCTCGAGCAACGAGTTGTCAATACCCGACCCAAAAACT GCGACCGGTATTTGCCGGTTCTTCGGGTTCTGCCCATTGAAGCTCCCAAAAACCGTGACATCCTTCTCACCCACATTCATCTGGACATGGATCAACCCTC TTGGAAAAACCATGACCTCTCCTTTTTTGAGAACCCGAGCGAAAACCTTATTGTTCGAGTCCACAAACCCGACGTAGACTCTGCTTTCCACGACGTAGGC GATCTCTGTCCCCCTCGGGTGGAAGTGGGGTGGGTTGACTGCCCCGGGCTAAAAGTCACCTCGGACGAACAACATTCCCAAGGTGTTCAGCCTGGGAAAT GTGGTTGGGTTGACCGGTATGGAAGCGAACCCGGTGGTGGAGAAGTTGTCGGGGGCTTTCAGGCCAGAGAACACAAAATCTCCAGCTGTGGCCTCCGACA GGTCCTTGCATTGGCCGACGCGGTGGTGGGTTGA
AA sequence Show only first row Show all	>Lus10022721 pacid=23178507 polypeptide=Lus10022721 locus=Lus10022721.g ID=Lus10022721.BGIv1.0 annot-version=v1.0 MINIKSPPHQNNFLGGRPERLLEQRVVNTRPKNCDRYLPVLRVLPIEAPKNRDILLTHIHLDMDQPSWKNHDLSFFENPSENLIVRVHKPDVDSAFHDVG DLCPPRVEVGWVDCPGLKVTSDEQHSQGVQPGKCGWVDRYGSEPGGGEVVGGFQAREHKISSCGLRQVLALADAVVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022721 [exp]	0	1
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	1.4	0.9621
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	2.0	0.9620
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10032683 [exp]	2.8	0.9401
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040226 [exp]	3.0	0.9547
AT2G34930			disease resistance family prot...		Lus10006945 [exp]	4.2	0.9159
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10024302 [exp]	6.3	0.9124
					Lus10034979 [exp]	7.4	0.9194
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10021233 [exp]	7.5	0.9141
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10000345 [exp]	7.5	0.7909
AT1G03230			Eukaryotic aspartyl protease f...		Lus10000080 [exp]	9.0	0.8406

Compare expression of checked genes

Lus10022721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.