Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48410 428 / 7e-150 alpha/beta-Hydrolases superfamily protein (.1) AT2G36290 406 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 395 / 6e-137 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 392 / 2e-136 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 383 / 2e-132 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 376 / 9e-130 alpha/beta-Hydrolases superfamily protein (.1) AT5G22460 336 / 3e-114 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03240 260 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 250 / 1e-80 alpha/beta-Hydrolases superfamily protein (.1) AT3G44510 246 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014191 [exp] 662 / 0 AT3G48410 412 / 3e-143 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 570 / 0 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10021371 [exp] 568 / 0 AT3G48410 473 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 397 / 4e-138 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 394 / 5e-137 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 392 / 3e-136 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 395 / 1e-135 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 391 / 1e-135 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10039775 [exp] 384 / 4e-133 AT2G36290 425 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237700 [exp] 437 / 4e-154 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 436 / 2e-153 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 410 / 3e-143 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 405 / 6e-141 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 402 / 2e-140 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 352 / 2e-120 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 343 / 4e-117 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164600 [exp] 287 / 2e-95 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G131300 [exp] 136 / 2e-35 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 132 / 5e-34 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10022722 pacid=23178634 polypeptide=Lus10022722 locus=Lus10022722.g ID=Lus10022722.BGIv1.0 annot-version=v1.0 ATGGCTGCAGGAACGAGCAGGAAGATATCTGCAAGGTCTCACACCAGAAGAGCTAACCAGAGCTGCTGTCCCAGCTTTCCTTCAGGGATCTTTCCTACAC TACTTGTGGTCTCTCTTGTTGGAATTTTGGCTTGGGGTTATCAAGCAATCCAACCACCTCCACCTAAGATATGCGGCACTCCTGGTGGGCCGCCGATAAC AGCACCGAGAATCAAGCTTCGGGACGGGAGGCATATGGCTTACCAAGAACGCGGTGTCTCGAAGGATCTTGCCAAGATTAAAGTGATCTTCGTCCACGGT TTAGATGTTTGCAGGCTCGACGATGTCATTCCTGCCAACACTTCTCCTGAACTTGTTCAGGAGCTGGGGATCTATTTTGTGTCCTACGACAGACCTGGCT ACGGCGAGAGTGATCCTCATCCATCAAGAACAGTGAAGAGTCAGATTTCGGATATCGAAGAACTTGCCGATCAATTAGGACTCGGGCCAAAATTCTATCT GATAGGTTACTCACTTGGTGGCCAATTGGCATGGGGTTCCCTGAAGTACATTCCTCACAGGCTAGCAGGGTTGACATTGTTGACCCCTGCAATCAACTAC TATTGGCCCGGTTTTCCTTCCAACTTATCTTCTCAAGCCTTGTTCGAAAACCCTCCTAGCGACTATTGCGCTTACCTCGTGGCTCATTACACTCCGTGGC TAACTCATTGGTGGAACACCCAAAAGTGGTTCCCGATTTTCGGAGGATTCAGCAAAAGCCCCCATATTTTCTCTCGCCAAGACATCGAAATCGCCTTGTC TCGTACAAGGAAAAGTAACATGTCCCATACGCGGCAGCAAGGAGAATACGAGTCGATCCACCGCGACTTGAACATAGGAGCTGGCTGGACCTGGGAATTT GATCCGTTGGATCTGGAGAACCCTTTCCCAGAGAATGAAGTCTCTATTCATCTGTGGCAAGGAGATGAAGATAGGATCGTGCCTGCTACGCTGCAACGAT ACATTGCTAAGCGGCTTTCGTGGGTTCGGTACCACGAGCTTTCAGGTTCTGGACATGCTTTCCCTCATATGGATGGGATGGCTGACATCATTATTAAGAC TATGCTAACTTAG
AA sequence Show only first row Show all	>Lus10022722 pacid=23178634 polypeptide=Lus10022722 locus=Lus10022722.g ID=Lus10022722.BGIv1.0 annot-version=v1.0 MAAGTSRKISARSHTRRANQSCCPSFPSGIFPTLLVVSLVGILAWGYQAIQPPPPKICGTPGGPPITAPRIKLRDGRHMAYQERGVSKDLAKIKVIFVHG LDVCRLDDVIPANTSPELVQELGIYFVSYDRPGYGESDPHPSRTVKSQISDIEELADQLGLGPKFYLIGYSLGGQLAWGSLKYIPHRLAGLTLLTPAINY YWPGFPSNLSSQALFENPPSDYCAYLVAHYTPWLTHWWNTQKWFPIFGGFSKSPHIFSRQDIEIALSRTRKSNMSHTRQQGEYESIHRDLNIGAGWTWEF DPLDLENPFPENEVSIHLWQGDEDRIVPATLQRYIAKRLSWVRYHELSGSGHAFPHMDGMADIIIKTMLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10022722 [exp]	0	1
AT4G04960			Concanavalin A-like lectin pro...		Lus10018602 [exp]	1.7	0.9600
AT1G45063			copper ion binding;electron ca...		Lus10038098 [exp]	2.0	0.9594
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Lus10011479 [exp]	5.1	0.9519
AT5G10530			Concanavalin A-like lectin pro...		Lus10020456 [exp]	6.8	0.9673
AT2G18210			unknown protein		Lus10028324 [exp]	7.3	0.9620
AT3G43790		ZIFL2	zinc induced facilitator-like ...		Lus10037425 [exp]	7.5	0.9516
AT5G04500			glycosyltransferase family pro...		Lus10038646 [exp]	8.7	0.9514
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017485 [exp]	13.0	0.9311
AT1G47530			MATE efflux family protein (.1...		Lus10026323 [exp]	13.4	0.9418
AT5G04500			glycosyltransferase family pro...		Lus10037920 [exp]	16.5	0.9220

Compare expression of checked genes

Lus10022722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.