Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36300 320 / 2e-111 Integral membrane Yip1 family protein (.1) AT3G52760 318 / 2e-110 Integral membrane Yip1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021374 [exp] 364 / 8e-129 AT2G36300 380 / 5e-135 Integral membrane Yip1 family protein (.1) Lus10017054 [exp] 313 / 8e-108 AT3G52760 315 / 3e-108 Integral membrane Yip1 family protein (.1) Lus10014191 [exp] 96 / 4e-23 AT3G48410 412 / 3e-143 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G152600 [exp] 351 / 8e-124 AT2G36300 365 / 6e-129 Integral membrane Yip1 family protein (.1) Potri.004G190800 [exp] 345 / 2e-121 AT2G36300 367 / 8e-130 Integral membrane Yip1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [flax] [poplar] Yip1 PF04893 [flax] [poplar] Yip1 Yip1 domain
Representative CDS sequence Show only first row Show all	>Lus10022723 pacid=23178524 polypeptide=Lus10022723 locus=Lus10022723.g ID=Lus10022723.BGIv1.0 annot-version=v1.0 ATGACGAAGGAATTCAGCGTACCACCGGTCATCTTCCCCTCCGGCGGCAATCCGACTGTCGCCGGCGGAGCCGGCTTGCAGCAACGGCGTCCTCCGACGG CTCCCTTTCAGCCTCATCGTTCTTACGGTGGCGGCACGATCGGTGGAGGTCCCGCTCCCTCTTCCGCTACTTTCGACGACGAAGAGCCTCTCCTCGACGA GCTAGGTATCCACCCTGATCAAATATGGCGGAAGACGAAATCGATTCTGAATCCTTTCCGGGTTAACTCCGACGTTCACAAGGACTCCGATCTATCCGGC CCGATCTTCTTGTATCTATCACTGTGCCTCTTTCAATTACTCGCTGGGAAGATTCAATTCGGGGTGATATTGGGGTGGATCGTCGTGTCGTCGATTTTCC TTTACGTTGTTTTCAACATGCTCGCTGGGAGGAACGGGAATTTGGATCTGCACACATGCACGAGCGTGGTCGGGTATTGTTTGCTTCCGGTGGTTATGCT ATCGGCGATTTCTTTGTTCTTGCCTCAGGGGGGGCCGATTAGATTCATAATCTCTGGTGTGTTCGTGATTTGGGCAACTCGAGCTTGCACCAATCTGATG GTGGAAGTGGCGCAAGGTGGAGAGGAGCATCGTGGGTTGATTGCGTACGCTTGTTTCCTGATTTACACTCTGTTTTCGTTGCTTGTGATATTCTAG
AA sequence Show only first row Show all	>Lus10022723 pacid=23178524 polypeptide=Lus10022723 locus=Lus10022723.g ID=Lus10022723.BGIv1.0 annot-version=v1.0 MTKEFSVPPVIFPSGGNPTVAGGAGLQQRRPPTAPFQPHRSYGGGTIGGGPAPSSATFDDEEPLLDELGIHPDQIWRKTKSILNPFRVNSDVHKDSDLSG PIFLYLSLCLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTSVVGYCLLPVVMLSAISLFLPQGGPIRFIISGVFVIWATRACTNLM VEVAQGGEEHRGLIAYACFLIYTLFSLLVIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52760			Integral membrane Yip1 family ...		Lus10022723 [exp]	0	1
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10010037 [exp]	1.4	0.8008
AT1G61065			Protein of unknown function (D...		Lus10011208 [exp]	7.2	0.7522
AT3G54040			PAR1 protein (.1)		Lus10021114 [exp]	7.7	0.6952
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10041410 [exp]	11.4	0.7393
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10033232 [exp]	11.8	0.7268
AT5G01850			Protein kinase superfamily pro...		Lus10025154 [exp]	23.9	0.7099
AT3G49060			U-box domain-containing protei...		Lus10014772 [exp]	28.0	0.7264
AT3G57810			Cysteine proteinases superfami...		Lus10028840 [exp]	28.8	0.7066
AT2G22910		NAGS1	N-acetyl-l-glutamate synthase ...		Lus10012093 [exp]	29.8	0.7231
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10038907 [exp]	32.4	0.7258

Compare expression of checked genes

Lus10022723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.