Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36305 300 / 6e-101 RCE1, ATFACE2, ATFACE-2 RAS-CONVERTING ENZYME 1, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME 2, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME-2, farnesylated protein-converting enzyme 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014190 [exp] 337 / 5e-116 AT2G36305 291 / 1e-98 RAS-CONVERTING ENZYME 1, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME 2, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME-2, farnesylated protein-converting enzyme 2 (.1) Lus10014189 [exp] 48 / 4e-07 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083300 [exp] 350 / 1e-120 AT2G36305 382 / 1e-133 RAS-CONVERTING ENZYME 1, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME 2, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN-CONVERTING ENZYME-2, farnesylated protein-converting enzyme 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0472 [flax] [poplar] Peptidase_U PF02517 [flax] [poplar] CPBP CPBP intramembrane metalloprotease
Representative CDS sequence Show only first row Show all	>Lus10022724 pacid=23178551 polypeptide=Lus10022724 locus=Lus10022724.g ID=Lus10022724.BGIv1.0 annot-version=v1.0 ATGGACGCCGTAGGAGCAGGTTTGTCTAAATCGGCGGCGGGGCTAGCCTGCNNNNNNNNNNGGGCCCACCGCCCCCACCGCCATGGCATTGTTGTACGTG GCAATACTCTATGCTCCGACTCTAATCCTCCGCCTTCCCCAGCCTTCATCCTTGACGGAGTTCATGGTCCGGCGATTCGTCTGCGCCGCCATCTCTTCCG TCGTGTCTATTGCTGCCTGTGCTCTCATACTTCCGCTACGATTGATAATGCTGATTTGAGGATCGATACTCCAATTAGAAGGAAACATGTCAGAAGCACG GGGATACCTTCTCCTTCTCTTTTAGCCATCTATGGAATCCGACTGGATCACATTTGGCAAGCTGTGGTCTACCCTCTTTCCTTGACTTCCTTAATGTACG CTGGATCTCTAGTACGCAACCTTCTGCAAGTGATGGAGTCATGGACGGAACATACGAACCAAGGTGGAAACGTGCTTGACTTTGCGAGTGATCAATTGCA AGACTTCCGCGCTTGGATGTCTTCGACTGTCTCGAATGTCTTGGCTTGGCGTAACTACGTTGTGGCTCCAATAACAGAGGAGTTGGTCTTTAGAGCATGT ATGATTCCTCTACTTCTATGTGGAGGATTCAAGCCCTACATTGTCATCTGTCTGTGCCCTGTTCTTTTCAGCTTGGCTCATTTGAACCACTGGATGGAGA TTTATTGCCAGCACAACTATAGCTTCATCAAAGCGTTCCTGGTTGTAGGTCTCCAGCTTGGTTACACTGTGATATTTGGTTCCTATGCCTCGTTTGTTTT CATTCGAACAGGGCACATTATTGCTCCGTTACTTGCTCACGTATTCTGCAATTATATGGGGTTGCCGGTGTTTGTCGCAAGGAAGAACGGAGCGTTGGTG ACTGCGGCATTTGTGGCGGGGATTGTATCTTTCATCTGGCTACTCTTTCCATTAACGCAACCTGACTTGTACCATGACAGAACAGACGATTGCAGATGTT GGCATGGATACTGTTCTTGGAAATGA
AA sequence Show only first row Show all	>Lus10022724 pacid=23178551 polypeptide=Lus10022724 locus=Lus10022724.g ID=Lus10022724.BGIv1.0 annot-version=v1.0 MDAVGAGLSKSAAGLACXXXXAHRPHRHGIVVRGNTLCSDSNPPPSPAFILDGVHGPAIRLRRHLFRRVYCCLCSHTSATIDNADLRIDTPIRRKHVRST GIPSPSLLAIYGIRLDHIWQAVVYPLSLTSLMYAGSLVRNLLQVMESWTEHTNQGGNVLDFASDQLQDFRAWMSSTVSNVLAWRNYVVAPITEELVFRAC MIPLLLCGGFKPYIVICLCPVLFSLAHLNHWMEIYCQHNYSFIKAFLVVGLQLGYTVIFGSYASFVFIRTGHIIAPLLAHVFCNYMGLPVFVARKNGALV TAAFVAGIVSFIWLLFPLTQPDLYHDRTDDCRCWHGYCSWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Lus10022724 [exp]	0	1
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10018155 [exp]	6.2	0.8965
AT2G40090		ATATH9	ABC2 homolog 9 (.1)		Lus10040196 [exp]	8.1	0.8875
AT1G03475		LIN2, HEMF1, AT...	LESION INITIATION 2, Coproporp...		Lus10017221 [exp]	9.3	0.8973
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	10.4	0.8882
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10024306 [exp]	15.5	0.8897
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10015091 [exp]	15.9	0.8099
AT1G33970			P-loop containing nucleoside t...		Lus10005299 [exp]	16.5	0.8864
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031430 [exp]	16.8	0.8558
AT2G28360			SIT4 phosphatase-associated fa...		Lus10016089 [exp]	21.9	0.8871
AT3G53270			Small nuclear RNA activating c...		Lus10008478 [exp]	22.6	0.8744

Compare expression of checked genes

Lus10022724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.