Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51550 1170 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT3G04690 761 / 0 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G28680 757 / 0 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT5G39000 687 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G38990 657 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 591 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT3G46290 577 / 0 HERK1 hercules receptor kinase 1 (.1) AT5G59700 563 / 0 Protein kinase superfamily protein (.1) AT1G30570 558 / 0 HERK2 hercules receptor kinase 2 (.1) AT2G21480 548 / 0 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014185 [exp] 1642 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10016907 [exp] 721 / 0 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10042537 [exp] 668 / 0 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10021998 [exp] 661 / 0 AT3G04690 929 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10032971 [exp] 622 / 0 AT3G51550 706 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10032976 [exp] 614 / 0 AT3G51550 682 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10003942 [exp] 607 / 0 AT3G51550 656 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10037887 [exp] 603 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10028140 [exp] 582 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G138700 [exp] 1216 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 1178 / 0 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.008G105500 [exp] 780 / 0 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 778 / 0 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096600 [exp] 754 / 0 AT3G51550 829 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096000 [exp] 749 / 0 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G095900 [exp] 748 / 0 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.013G042500 [exp] 737 / 0 AT3G04690 1036 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.005G055200 [exp] 736 / 0 AT5G28680 1026 / 0.0 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 734 / 0 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10022728 pacid=23178644 polypeptide=Lus10022728 locus=Lus10022728.g ID=Lus10022728.BGIv1.0 annot-version=v1.0 ATGAGGAGAAAAAGTTTACTCTGCTTCTGGGCTCTCCTCCTCCTCGCCCTCGCCGCCGGCGACCTCCGCCTCCTCCGAGCTCAAAACTACGCCCCCACCG ACAAGATCCTTCTTAACTGCGGCGCCAACTCCGATCTCAACGACACCGACGGACAGATATGGCATCCGGACGACAAAGGTTCCAAATACCTAACCCCGGC GGACTCCTTAACCTCTCCCGCCTCATCTCAGAACCCCGGCGTCCCTCAGGTTCCATTCATGACCGCCCGTATCTTCCGGTCGAACTTCACCTACACTTTC CCCGTAGGCTCCGGCCATAAGTTCCTCCGCCTCTACTTCTACCCGGCTTCCTACGGCAACAACCTCAACGCCACCGATGCTCTGTTCTCCGTCTCCGCCG GCTCCTTCACTCTGCTCAACAACTTCAGCGTCTCTCAAACAGCTTCGGCGCTCAATTGGGACGTCGTCGTGAAGGAATACTCCATCAACGTGGAAACCGA ATCCGAATCGCTCAATGTAACTTTCTCTCCTTCCGCTACTAATTCCAGAGCTTTTGCTTTCGTTAATGGGATAGAGATTATTTCCATGGATGATATCTAT AGTTCTCCGGATGGATCTCTGCCTATTATCGGATCGACTACTGGAACTTACACTATTGATAACTCATCTGCTCTTGAGAATGTCTACCGATTGAACGTCG GTGGTAACGACATTTCTCCCTCGGGGGATACCGGTATGCTCCGATCTTGGGCCGATGATCAGGCTTACATTTTCAGCGCGGCGATTGGAGTTGTGCAGTC TGCCGATCCGGGGGTTAAGCTTTCGTATCCTTCTGGTACGCCTTCGTACATTGCTCCTGAGAATGTGTACATGACTGCTAGAACAATGGGGCCCACTCCT CAATTCAATCGGAACTCCAATCTGACTTGGATATTCAGCGTCGATTCGGGGTTCAATTACTTGAGTGGTGTTGCTGTTCATAGTGATTATGTGGTGCTTG TCAATGGCGGTAAGAATCCCCAGGAGGATCTTTGGCTCGCGCTTACCCCGAATGATAGGAACAAGCCGGAGTACTATGATGCTATCTTGAATGGTGTGGA GATATTCAAGATAAGTACTAGTGGCTCTAAGAATCTTGCTGGGCCGAATCCGGTTCCTCTTCCGAAACAGGAGATAATCGATCCGTCGAGGGTTAGACCG GCTAATAAGCATTCGAAAGCGAAAGTCGGAATCATAATCGGAGGTGTGCTCGGTGGTGTTTTAGCTGCTTTAGCTGTTGGTTACTGTTTGTTCTGTGTGT ATCCTCGTAGAAGGCAAGGGAAGGAAACCGGTTCCAGCGATGGTCCGTCCGGTTGGCTTCCTCTATCTCTATACGGGAACTCGCACTCGGGCGGTTCGGC CAAGACGAACACGACTGGCACGGGGAGCTACGCTTCTTCGATGCCGTCGAATCTCTGCCGTCATTTCTCGTTTGCCGAGATCAAGGCTGCCACAAACAAT TTCGACGACTCGAGGACCCTAGGGGTTGGAGGGTTTGGAAAAGTTTACAGAGGTGAGGTTGACGGCGGCACGACGAAAGTGGCCATCAAGCGTGGTAACC CGCTCTCGGAGCAAGGTGTGCACGAGTTCCAGACCGAGATTGAGATGCTCTCGAAGCTTCGACATCGCCACCTCGTTTCGTTGATAGGGTACTGCGAGGA GAATTGCGAGATGATCTTGGTTTATGACTACATGGCGTACGGGACGTTGAGGGAGCATTTGTACAAGACCTCAAAGCCTCCGTTGCCGTGGAAGCAAAGG CTCGAGATTTGCATTGGTGCTGCTCGCGGTCTGCATTACCTTCACACGGGTGCGAAACACACGATCATTCACCGAGATGTGAAGACGACCAACATTTTGT TGGACGAGAAGTGGGTGGCGAAGGTTTCGGATTTCGGATTGTCGAAAACCGGTCCGATGCTGGATCATACTCACGTAAGCACGGTCGTGAAGGGGAGTTT CGGGTATTTGGATCCGGAATACTTCAGGAGGCAGCAGCTGACCGAGAAATCGGATGTCTACTCGTTTGGAGTGGTTCTATTCGAGATTCTATGCGCACGA CCGGCGCTCAACCCGACTCTACCAAAAGAGCAAGTCAGCCTTGCGGAATGGGCGGTTTACTGCTACAAGAAGGGAATGCTGGACGAAATCACTGATCCAT ACCTCAAGGGCAAGATAGCACCAGAATGCTTCAAGAAGATCGCAGAGACAGCGATGAAATGCGTAGCCGACAATGGCACCGAGCGGCCCTCGATGGGAGA CGTGCTGTGGAATCTCGAGTTCGCCCTTCAGCTTCAGGAGAGTGCAGAAGAAAGCGGCAAGGTCTGCAGCGGTGGAATCGAGAAGGGCGACGAGGAGGAG CCATTCACTGGTAAGGGGAAGAAGGATCTGAACGAGTCGCCCGGGTTCGATGTGAACGGGTCCGATTCGAGAACGAGCGGGATGAGCATGAGTATCGGAG GGAGGAGCCTTGCGAGTGAAGACTCGGACGGGTTGACCCCGAGTGCTGTGTTCTCGCAGATCATGAACCCGAAGGGGCGTTGA
AA sequence Show only first row Show all	>Lus10022728 pacid=23178644 polypeptide=Lus10022728 locus=Lus10022728.g ID=Lus10022728.BGIv1.0 annot-version=v1.0 MRRKSLLCFWALLLLALAAGDLRLLRAQNYAPTDKILLNCGANSDLNDTDGQIWHPDDKGSKYLTPADSLTSPASSQNPGVPQVPFMTARIFRSNFTYTF PVGSGHKFLRLYFYPASYGNNLNATDALFSVSAGSFTLLNNFSVSQTASALNWDVVVKEYSINVETESESLNVTFSPSATNSRAFAFVNGIEIISMDDIY SSPDGSLPIIGSTTGTYTIDNSSALENVYRLNVGGNDISPSGDTGMLRSWADDQAYIFSAAIGVVQSADPGVKLSYPSGTPSYIAPENVYMTARTMGPTP QFNRNSNLTWIFSVDSGFNYLSGVAVHSDYVVLVNGGKNPQEDLWLALTPNDRNKPEYYDAILNGVEIFKISTSGSKNLAGPNPVPLPKQEIIDPSRVRP ANKHSKAKVGIIIGGVLGGVLAALAVGYCLFCVYPRRRQGKETGSSDGPSGWLPLSLYGNSHSGGSAKTNTTGTGSYASSMPSNLCRHFSFAEIKAATNN FDDSRTLGVGGFGKVYRGEVDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAYGTLREHLYKTSKPPLPWKQR LEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPMLDHTHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEILCAR PALNPTLPKEQVSLAEWAVYCYKKGMLDEITDPYLKGKIAPECFKKIAETAMKCVADNGTERPSMGDVLWNLEFALQLQESAEESGKVCSGGIEKGDEEE PFTGKGKKDLNESPGFDVNGSDSRTSGMSMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022728 [exp]	0	1
AT5G01710			methyltransferases (.1)		Lus10012217 [exp]	1.4	0.8940
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10022748 [exp]	3.0	0.8718
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10037994 [exp]	4.2	0.8553
AT1G01540			Protein kinase superfamily pro...		Lus10007919 [exp]	5.7	0.8459
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10029215 [exp]	6.2	0.8443
AT2G25270			unknown protein		Lus10038102 [exp]	6.3	0.8741
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10034665 [exp]	8.4	0.8393
AT4G37250			Leucine-rich repeat protein ki...		Lus10030333 [exp]	8.7	0.8242
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10004159 [exp]	11.7	0.8684
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Lus10026428 [exp]	11.8	0.8572

Compare expression of checked genes

Lus10022728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.