Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01930 276 / 4e-92 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) AT5G66460 199 / 2e-62 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) AT3G10900 193 / 2e-60 Glycosyl hydrolase superfamily protein (.1) AT3G10890 191 / 2e-59 Glycosyl hydrolase superfamily protein (.1) AT4G28320 190 / 6e-59 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) AT2G20680 186 / 2e-57 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) AT1G02310 165 / 2e-49 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) AT3G30540 124 / 1e-34 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014184 [exp] 320 / 2e-109 AT5G01930 674 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Lus10014288 [exp] 201 / 6e-63 AT5G66460 583 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007900 [exp] 201 / 1e-62 AT5G66460 417 / 4e-143 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10030347 [exp] 198 / 1e-61 AT5G66460 422 / 2e-145 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007210 [exp] 197 / 1e-61 AT5G66460 401 / 5e-138 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10025995 [exp] 202 / 2e-61 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10039833 [exp] 196 / 6e-61 AT2G20680 633 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10007211 [exp] 200 / 7e-60 AT1G02310 405 / 4e-134 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) Lus10031650 [exp] 192 / 9e-60 AT2G20680 655 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G138600 [exp] 302 / 5e-102 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.006G109900 [exp] 300 / 1e-100 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.007G022000 [exp] 214 / 5e-68 AT5G66460 573 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G120500 [exp] 211 / 6e-67 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G229600 [exp] 195 / 6e-61 AT5G66460 542 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.013G130400 [exp] 195 / 1e-60 AT2G20680 661 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.002G184500 [exp] 189 / 9e-59 AT5G66460 447 / 5e-156 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.006G009400 [exp] 184 / 3e-56 AT4G28320 430 / 2e-148 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) Potri.019G070200 [exp] 137 / 2e-39 AT3G10890 302 / 3e-100 Glycosyl hydrolase superfamily protein (.1) Potri.016G014801 [exp] 59 / 8e-11 AT2G20680 231 / 2e-74 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Lus10022729 pacid=23178609 polypeptide=Lus10022729 locus=Lus10022729.g ID=Lus10022729.BGIv1.0 annot-version=v1.0 ATGAGAGATGGTTGCAAACAAAGGGAACCAATTTGTGCTGAAGGATCAACCATTCTATGTCATTGGCTTCAACACTTACTGGCTGATGGTATTGTATTAT CTGCCGATCAATCGACCCGGACAAAGGTCTCTCAGCTCTTCCAGCAGGCTTCCTCGGTGGGATTCACTGTCTGCAGGACATGGGCGTTCAACGATGGACA ATATCGCTCACTTCAGAAATCCCCCGGTGTCTATGATGAGGACGTTTTCAAGGCATTGGATTTCGTGGTGAGCGAAGCCAAGAAGTACAAGATCAGACTG ATACTGTCCCTCCCCAATAACTGGGATGCCTATGGTGGAAAAGCTCAGTATGTCAAGTGGGGGAAGGAAGCAGGATTCAATCTCACCTCCGACGACGACT TCTTCTCCCACCCGACACTCAGATCCTACTACAAAGCTCACGTCAAGATGGTGCTGAACCGAGTCAACACCATCACAAATGTGACATACAAGGAAGACCC GACAGTCTTCGCATGGGAGTTGATGAACGAGCCTCGCTGCACCTCTGACCCTTCGGGAGACAAGCTTCAGGTTTGCGAGTAG
AA sequence Show only first row Show all	>Lus10022729 pacid=23178609 polypeptide=Lus10022729 locus=Lus10022729.g ID=Lus10022729.BGIv1.0 annot-version=v1.0 MRDGCKQREPICAEGSTILCHWLQHLLADGIVLSADQSTRTKVSQLFQQASSVGFTVCRTWAFNDGQYRSLQKSPGVYDEDVFKALDFVVSEAKKYKIRL ILSLPNNWDAYGGKAQYVKWGKEAGFNLTSDDDFFSHPTLRSYYKAHVKMVLNRVNTITNVTYKEDPTVFAWELMNEPRCTSDPSGDKLQVCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10022729 [exp]	0	1
					Lus10001533 [exp]	1.0	0.9772
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10042371 [exp]	1.4	0.9681
AT4G34410	AP2_ERF	RRTF1 (Redox Re...	redox responsive transcription...		Lus10014054 [exp]	2.8	0.9565
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10033680 [exp]	3.0	0.9587
AT3G11910		AtUBP13, UBP13	ubiquitin-specific protease 13...		Lus10013550 [exp]	3.3	0.9360
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10031958 [exp]	3.9	0.9515
AT1G56140			Leucine-rich repeat transmembr...		Lus10031777 [exp]	4.2	0.9503
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10027412 [exp]	4.5	0.9377
AT4G28380			Leucine-rich repeat (LRR) fami...		Lus10017713 [exp]	4.9	0.9353
AT1G54520			unknown protein		Lus10006109 [exp]	5.5	0.9246

Compare expression of checked genes

Lus10022729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.