Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01920 509 / 1e-178 STN8 State transition 8, Protein kinase superfamily protein (.1) AT1G68830 223 / 1e-66 STN7 STT7 homolog STN7 (.1) AT4G08470 60 / 2e-09 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT3G07980 59 / 5e-09 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT4G12020 59 / 6e-09 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT4G08500 56 / 3e-08 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT3G63340 56 / 6e-08 Protein phosphatase 2C family protein (.1.2) AT3G13530 56 / 7e-08 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT1G12680 54 / 2e-07 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1) AT1G32320 52 / 3e-07 ATMKK10 MAP kinase kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014183 [exp] 781 / 0 AT5G01920 651 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Lus10034273 [exp] 210 / 7e-62 AT1G68830 832 / 0.0 STT7 homolog STN7 (.1) Lus10041490 [exp] 135 / 3e-34 AT1G68830 754 / 0.0 STT7 homolog STN7 (.1) Lus10036464 [exp] 57 / 1e-08 AT1G12680 607 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10041132 [exp] 55 / 7e-08 AT1G12680 608 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10002469 [exp] 54 / 1e-07 AT1G71530 429 / 3e-143 Protein kinase superfamily protein (.1.2) Lus10034726 [exp] 54 / 2e-07 AT1G18670 782 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10042698 [exp] 53 / 4e-07 AT4G08500 518 / 5e-179 MAPK/ERK kinase kinase 1 (.1) Lus10021766 [exp] 53 / 4e-07 AT5G66850 452 / 7e-148 mitogen-activated protein kinase kinase kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109700 [exp] 550 / 0 AT5G01920 597 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Potri.016G138500 [exp] 538 / 0 AT5G01920 596 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Potri.008G116800 [exp] 219 / 6e-65 AT1G68830 883 / 0.0 STT7 homolog STN7 (.1) Potri.010G129532 [exp] 102 / 4e-25 AT1G68830 296 / 1e-98 STT7 homolog STN7 (.1) Potri.007G112400 [exp] 62 / 3e-10 AT1G12680 492 / 4e-172 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.017G048400 [exp] 61 / 1e-09 AT1G12680 471 / 7e-164 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.005G251500 [exp] 58 / 9e-09 AT1G12680 662 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.007G070100 [exp] 56 / 4e-08 AT3G13530 1960 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Potri.013G046100 [exp] 53 / 1e-07 AT3G04530 366 / 1e-128 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.005G094200 [exp] 54 / 2e-07 AT3G13530 1979 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022730 pacid=23178549 polypeptide=Lus10022730 locus=Lus10022730.g ID=Lus10022730.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCTCTGTTATGCAGCCCCAATCCAGCAACTCTTCATCACCCAACACCCAAAGTCATCACCTTTGCACCCTTAAACCCAACAAGTCTCACTC TATACAATTTCACCAGAAGAAGCAACCCAGTCGGCAAATGCTTCGCCTTTCCACCAGTTCCTGACGATTTTTTACTCGACCCGACCCGGGTCCCGGCTAT CCAATCCGGGTTGGCCCAGTTCCAGAGCTCGACGGCGGAACTATCGGAGCTGCAGAGATATGGGGTTCTGTTCTTCGCCGGACTCACTTGGGTTTACTTG ACTGCTAGGCCCGGGATTCTCGTCGGCGCCGTCGACGCTTACCTTCTGGCTCCGATTCAGTTAGCTCTGGACAGCTTGATCGGACGGAGGAGCCTCAAGA GATCGGATTTCCTGATCGGCGACAAGGTTGGAGAAGGGAGCTTTGGGGTTGTTTATTCGGGAGTGATTGTTCCAAAGAGCTATGCAAATGGTGGTGATGA AGTCAGGGTCCCGGCGAAAAGAGGGAGAGGGAAACCACAGGTAGAATCAGGGTCATTCAAGGATAAAGTCATTCTCAAGAAGGTGAAGATAGGAGTCCAA GGTGCAGAAGAATGCGGAGAATTCGAGGAGTGGTTCAACTACAGACTATCTAGAGCAGCTCCTGAAACATGCGCAGACTTTCTAGGAAGCTTTGTCGCTG ACAAAACAACCTCCCAGTTCACAAAGGGCGGGAAATGGCTCGTGTGGAAATTCGAGGGCGATTCCACGCTGGCGGATTACATGAAAGAACGAAACTTTCC CTTCAACTTGGAGTACACAATGTTCGGCCGAGTCCTGCAAGGATCAAACTCCGTTCAACGGAATGCCTTGATAGTCAAGCAAGTACTGAGGCAGATCATT ACCTCGCTGAGGAAAATCCACGACACGGGGATCGTACACCGAGATGTCAAGCCTGCTAACTTAGTCGTCACGAAAAAGGGCCAGATCAAGCTCATAGATT TCGGTGCAGCTGCAGATCTTCGCATTGGAAAGAACTACTTCCCGAAAATCGGTCTCCTGGATCCCGATTACTGCCCTCCCGAACTCTACGTTCTCCCCGA TGACACCCCGAGCCCCCCACCCGAGCCCATTGCAGCCTTGCTTTCGCCGATCTTATGGCAGCTGAACAGTCCTGATCTTTTCGACATGTACTCTGCTGGG GTTGTGCTCTTGCAAATGGCTATACCTACCTTGAGGTCCACGTCAGGGTTGAAGAATTTCAACATGGAGATAAAAAACATGCGAAGCGAGGGGAACTTCT TAGAAGAGGGCGGTTATCGGCTTCGGCTGCTCTCAGGCATCCTTATTTTCTGTTGGGAAGTGATCAGGCGGCCGCAGTGCTTTCAAAGCTGA
AA sequence Show only first row Show all	>Lus10022730 pacid=23178549 polypeptide=Lus10022730 locus=Lus10022730.g ID=Lus10022730.BGIv1.0 annot-version=v1.0 MAASLLCSPNPATLHHPTPKVITFAPLNPTSLTLYNFTRRSNPVGKCFAFPPVPDDFLLDPTRVPAIQSGLAQFQSSTAELSELQRYGVLFFAGLTWVYL TARPGILVGAVDAYLLAPIQLALDSLIGRRSLKRSDFLIGDKVGEGSFGVVYSGVIVPKSYANGGDEVRVPAKRGRGKPQVESGSFKDKVILKKVKIGVQ GAEECGEFEEWFNYRLSRAAPETCADFLGSFVADKTTSQFTKGGKWLVWKFEGDSTLADYMKERNFPFNLEYTMFGRVLQGSNSVQRNALIVKQVLRQII TSLRKIHDTGIVHRDVKPANLVVTKKGQIKLIDFGAAADLRIGKNYFPKIGLLDPDYCPPELYVLPDDTPSPPPEPIAALLSPILWQLNSPDLFDMYSAG VVLLQMAIPTLRSTSGLKNFNMEIKNMRSEGNFLEEGGYRLRLLSGILIFCWEVIRRPQCFQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01920		STN8	State transition 8, Protein ki...		Lus10022730 [exp]	0	1
AT5G07020			proline-rich family protein (....		Lus10024125 [exp]	1.4	0.9777
AT5G01920		STN8	State transition 8, Protein ki...		Lus10014183 [exp]	1.7	0.9763
AT5G07020			proline-rich family protein (....		Lus10005388 [exp]	2.0	0.9768
AT3G11420			Protein of unknown function (D...		Lus10002713 [exp]	2.6	0.9458
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10020326 [exp]	3.9	0.9598
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Lus10003640 [exp]	4.5	0.9254
AT3G25805			unknown protein		Lus10022435 [exp]	4.5	0.9603
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10017401 [exp]	6.0	0.9396
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10010200 [exp]	6.3	0.9385
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10010322 [exp]	6.5	0.9569

Compare expression of checked genes

Lus10022730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.