Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51110 232 / 5e-78 Transcriptional coactivator/pterin dehydratase (.1.2) AT1G29810 96 / 1e-24 Transcriptional coactivator/pterin dehydratase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014182 [exp] 327 / 4e-115 AT5G51110 246 / 3e-83 Transcriptional coactivator/pterin dehydratase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G112400 [exp] 257 / 1e-87 AT5G51110 239 / 2e-80 Transcriptional coactivator/pterin dehydratase (.1.2) Potri.015G110500 [exp] 249 / 3e-85 AT5G51110 229 / 2e-77 Transcriptional coactivator/pterin dehydratase (.1.2) Potri.011G078900 [exp] 95 / 5e-25 AT1G29810 201 / 3e-67 Transcriptional coactivator/pterin dehydratase (.1) Potri.001G352800 [exp] 92 / 5e-23 AT1G29810 224 / 3e-75 Transcriptional coactivator/pterin dehydratase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01329 [flax] [poplar] Pterin_4a Pterin 4 alpha carbinolamine dehydratase
Representative CDS sequence Show only first row Show all	>Lus10022731 pacid=23178671 polypeptide=Lus10022731 locus=Lus10022731.g ID=Lus10022731.BGIv1.0 annot-version=v1.0 ATGGCCACCTCCTACCAAGCTCTCTTCGTTTCTCTTCCCCTTCCTCCCAAGCTTTCTCCATCTTTCAAAATCTCCCCCGGCGTTCCTAGTTTGAAGAGAA CTGGCATCCTCAGAACCCGGCTGGCAGCCGGCGGCGGCGACTTGGGAGATTTCGGGGCAAGAGACCCATTTCCGGCGGAGATAGAAAGCCGATTCGGAGA GAAAGTGCTTGGAAACAGTGACTCGGAACACAAAATCTTGATTCCAAACGTTTCAGCAATGTCCCTATCCCAGCTGGAGTGTTCCCCTGTTTCTCCAGTG CAGCCTCCCATGTCCAAGGACGACGCCCAACGCCTCTTGAAGAAGGTATTAGGGTGGAGATTGGTGGAGGAATCAGGAGGTATGAAGCTGCAATGCTTGT GGAAATTGAGGGATTTCAGCAGTGGAGTTGAACTTATCAACAGAATCCATAAAGTCTGTGAGGGGAATTCTGGACATTTCCCCAACCTGCATATAGAACA GCCTAACCAAGTCAGAGCTGAGCTATGGACTTCGTCGACCGGAGGGTTGAGCATGAACGATTTCATCATTGCTGCCAAGATAGATGGGATTAAGACCTCT GATCTTGCTCCTAGGAAGCGAGTTTGGGCTTAA
AA sequence Show only first row Show all	>Lus10022731 pacid=23178671 polypeptide=Lus10022731 locus=Lus10022731.g ID=Lus10022731.BGIv1.0 annot-version=v1.0 MATSYQALFVSLPLPPKLSPSFKISPGVPSLKRTGILRTRLAAGGGDLGDFGARDPFPAEIESRFGEKVLGNSDSEHKILIPNVSAMSLSQLECSPVSPV QPPMSKDDAQRLLKKVLGWRLVEESGGMKLQCLWKLRDFSSGVELINRIHKVCEGNSGHFPNLHIEQPNQVRAELWTSSTGGLSMNDFIIAAKIDGIKTS DLAPRKRVWA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51110			Transcriptional coactivator/pt...		Lus10022731 [exp]	0	1
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030873 [exp]	1.4	0.9603
AT3G60750			Transketolase (.1.2)		Lus10031708 [exp]	2.0	0.9537
AT2G45290			Transketolase (.1)		Lus10031128 [exp]	2.4	0.9503
AT3G53470			unknown protein		Lus10014016 [exp]	2.6	0.9361
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030615 [exp]	2.8	0.9489
AT5G51110			Transcriptional coactivator/pt...		Lus10014182 [exp]	4.2	0.9383
AT5G58330			lactate/malate dehydrogenase f...		Lus10037935 [exp]	5.0	0.9419
AT4G25910		ATCNFU3, NFU3	NFU domain protein 3 (.1)		Lus10001439 [exp]	6.2	0.9277
AT3G27850		RPL12-C	ribosomal protein L12-C (.1)		Lus10022261 [exp]	6.3	0.9299
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10016971 [exp]	7.5	0.9276

Compare expression of checked genes

Lus10022731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.