Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08720 402 / 6e-138 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 365 / 3e-123 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT1G45160 129 / 3e-32 Protein kinase superfamily protein (.1.2) AT5G04510 109 / 3e-26 ATPDK1, PDK1 3'-phosphoinositide-dependent protein kinase 1 (.1.2) AT5G03640 110 / 5e-26 Protein kinase superfamily protein (.1) AT3G45780 110 / 5e-26 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT3G10540 108 / 7e-26 3-phosphoinositide-dependent protein kinase (.1) AT2G25880 105 / 8e-26 ATAUR2 ataurora2 (.1.2) AT3G52890 109 / 1e-25 KIPK KCBP-interacting protein kinase (.1.2) AT5G58140 107 / 7e-25 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014181 [exp] 623 / 0 AT3G08720 307 / 1e-100 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10025213 [exp] 395 / 1e-130 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10033125 [exp] 290 / 1e-92 AT3G08720 515 / 1e-179 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10036653 [exp] 286 / 1e-90 AT3G08720 515 / 1e-178 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10021386 [exp] 209 / 2e-65 AT3G08720 445 / 4e-157 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10018122 [exp] 134 / 5e-34 AT3G45780 1191 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10031906 [exp] 127 / 2e-31 AT1G48490 1358 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036144 [exp] 120 / 5e-29 AT3G45780 1061 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10026572 [exp] 110 / 8e-26 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G138400 [exp] 428 / 6e-148 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.006G109600 [exp] 417 / 8e-144 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.012G073700 [exp] 304 / 2e-99 AT3G08720 483 / 1e-168 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.019G061800 [exp] 134 / 1e-37 AT3G08720 197 / 8e-62 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.008G028800 [exp] 112 / 9e-27 AT3G10540 809 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Potri.010G232800 [exp] 110 / 3e-26 AT3G10540 834 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Potri.009G170550 [exp] 105 / 5e-26 AT5G58140 400 / 1e-134 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.009G146700 [exp] 108 / 3e-25 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.004G209700 [exp] 107 / 4e-25 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.004G186300 [exp] 107 / 5e-25 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022732 pacid=23178509 polypeptide=Lus10022732 locus=Lus10022732.g ID=Lus10022732.BGIv1.0 annot-version=v1.0 ATGTCGGTGCTCTGGAGACATCATCACGCCTTAGCTTCTCGTGCCATCTGCAGTTGGGGCATCCTTTGTACCAACAGTTGGCTTATTTGTGAAGCAAAAA TAGAACAAACCACGGTTCCCTCAACTGGAACTGGTAATTCCAAATCAAACAAACCCCTGCAGATCGAGCTGTTGTTTCCTGTTACCACTCCGGATCATGT TGTTTTTAACGACCACTTGGAGCTGGACTTTTCTGATGTCTTCGGTCCTCTGCCGGTTCAGGGATCACTTGAATCCAACTTACATTGTGAATGTGTTTAT GATGATCCTGCTTTGATCCACAACCGATCACATTCCTTGGTTGGCCCTTCTTCGTACGTAAGCCAGTCACTAAAGCACAGCAGGCTCACTCTGGATGAGA CAGATTTCGATCTGCAGGAAAAAACCATTAAGGAGCTCCAGGAATCCTCCTCGGTGGACGATATTCCCGACATTGCCATTGAATGTTCTGTAAAGGACTC TGCCGCTGTAGGCACTGAAGACTTTGAGGTTTTAAAGGTTGTTGGGCAAGGTGCACTTGGGAAAGTTTACCAGGTCAGGAAAAAGGGAACGTGTGATATA TTTGCAATGAAGGTTATGCGGAAGGATAAGATAGTTGAGAATGATCAAGTTGATTACATGAAAGCTGAGAGGGAAATTCTGTCCAAAGTTGACCACCCCT TCATTGTCCAGCTTAAATACGCATTCCAGCTAATATTTCATAAATGGCGGCCACCTCTTCTTTCAGCTATATCACCAAGGGCTTTTCAGGTCATGCCGAC TGATTTTGGCCTGGCCAAAGAATTCGACGACAATACGAGATCCAACTCGATGTGTGGAACTGTAGAATATATGGCGCCCGAAATTGTTCAAGGGAAGGGC CATGATAAGGCTGCTGATTGGTGGAGTGTTGGCATTTTGCTGTATGAGATGCTCACTGGCAAGCCTCCTTTCATTGGTGGGACCAGAGGTAAAATTCAGC AGAAGATAGTAAGAGAAAAGATAAAGTTGCCAGCTTTCTTGTCAAGTGATGCGCATAGTCTGCTTAAAGGGCTGCTACAGAAGGAAACGAGCAGGCGGCT AGGATGCAGAGCTAAGGGCAGTCAAGAAATCAAGGATCACAAATTGTTCAAGCCGATCAATTGGAGGAAACTAGAGGGAAGGGAGTCGAGCCGAGTTTCC GTCCGAATGTAG
AA sequence Show only first row Show all	>Lus10022732 pacid=23178509 polypeptide=Lus10022732 locus=Lus10022732.g ID=Lus10022732.BGIv1.0 annot-version=v1.0 MSVLWRHHHALASRAICSWGILCTNSWLICEAKIEQTTVPSTGTGNSKSNKPLQIELLFPVTTPDHVVFNDHLELDFSDVFGPLPVQGSLESNLHCECVY DDPALIHNRSHSLVGPSSYVSQSLKHSRLTLDETDFDLQEKTIKELQESSSVDDIPDIAIECSVKDSAAVGTEDFEVLKVVGQGALGKVYQVRKKGTCDI FAMKVMRKDKIVENDQVDYMKAEREILSKVDHPFIVQLKYAFQLIFHKWRPPLLSAISPRAFQVMPTDFGLAKEFDDNTRSNSMCGTVEYMAPEIVQGKG HDKAADWWSVGILLYEMLTGKPPFIGGTRGKIQQKIVREKIKLPAFLSSDAHSLLKGLLQKETSRRLGCRAKGSQEIKDHKLFKPINWRKLEGRESSRVS VRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10022732 [exp]	0	1
AT5G67090			Subtilisin-like serine endopep...		Lus10002044 [exp]	2.4	0.8803
					Lus10034545 [exp]	3.5	0.8803
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007059 [exp]	4.2	0.8803
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10016168 [exp]	4.9	0.8803
AT4G16195			Plant self-incompatibility pro...		Lus10017929 [exp]	5.5	0.8803
AT1G08790			Protein of unknown function (D...		Lus10042536 [exp]	6.0	0.7961
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10042979 [exp]	7.5	0.7108
					Lus10028981 [exp]	7.9	0.6947
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029379 [exp]	9.2	0.7286
AT1G17615			Disease resistance protein (TI...		Lus10018023 [exp]	9.4	0.6929

Compare expression of checked genes

Lus10022732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.