Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38570 244 / 5e-79 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014180 [exp] 512 / 0 AT2G38570 244 / 5e-79 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109500 [exp] 280 / 7e-93 AT2G38570 263 / 2e-86 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022733 pacid=23178620 polypeptide=Lus10022733 locus=Lus10022733.g ID=Lus10022733.BGIv1.0 annot-version=v1.0 ATGGGTTCAACACATCTTCTTCTTCAGTTCAACCATTCTCCGTTAATCTACCCTGCCAAACCCGCAAATTCCCGCTTCAGCTCCGTATTATGCGCAAGTC GAAGAAGAACCAGCCATGGCGAAATGGGTCCCCCGTACGACGAATTAGGGTTCGGAAAGAAAGTGAAGCAGGAGTTGGAGTTCCAGTTCGTACTGGACCA GGACTTGACCAATTCGAGCGTCGTTAAATTGAGAGGAGACGAAACAAGGAAGAACAAGAAGAAGCAGAATTGGGAAGAAGAAGACGAAGAAGAAGATGTT GAGAGACGAATCCGTGGAAGAGTGAAGTCGAGACGGCGAGAATTAGCGAATAGATCAGCGTTACTGGCGAGGCAAGTGATCAGCGTTAGGTCTGCGCTCA GCTTGGGTTTCATTTCCCAGCTCTGGGTCGACCCTGCTAATTGGGTGGTCATGGCTGTTGAGGTGAGACCAAACTTGCTCTCTGGAGAATCAGCAAGGTT TCTTCTCCAACACATTCGCCAGGTTGGAGATGTTGTGCTGGTTAAAGACGAGAATGTATTGGATCATGACTTGAACGTAGTTGGCCTCGAGACATTGGTC GGGTACCAAGTCTTCACACCTAGCCAGCGAAATATCGGCAAGGTACGGGGATTCTCTTTCAACATCAATTCCGGCACTGTGGAGTCACTAGAGCTCGATT CGTTCGGGATCTCCATCATCCCATCCAGTTTGGTGAGTACATACACACTGCCTGCTGAGGATGTTGTCGAGGTTTTCCAGGACATAGTGATAGTGCACGA AGCTGCAGCATCTCGAATCCAAAGGCTAACCAAGGGTTTTTGGGATGCCCGGCCTATGGATGCTTACGAAGACAAAGTGGGAGAGTACGCAGATACCAAA ACTGGCCCGGCAAAGAGGAGGGGGGAAAGATCAAGTACGAAAATTGTCGAACCGGATTTGAGAGAGGATGAATGGGAGCTGCCAATAGACTACTTATGA
AA sequence Show only first row Show all	>Lus10022733 pacid=23178620 polypeptide=Lus10022733 locus=Lus10022733.g ID=Lus10022733.BGIv1.0 annot-version=v1.0 MGSTHLLLQFNHSPLIYPAKPANSRFSSVLCASRRRTSHGEMGPPYDELGFGKKVKQELEFQFVLDQDLTNSSVVKLRGDETRKNKKKQNWEEEDEEEDV ERRIRGRVKSRRRELANRSALLARQVISVRSALSLGFISQLWVDPANWVVMAVEVRPNLLSGESARFLLQHIRQVGDVVLVKDENVLDHDLNVVGLETLV GYQVFTPSQRNIGKVRGFSFNINSGTVESLELDSFGISIIPSSLVSTYTLPAEDVVEVFQDIVIVHEAAASRIQRLTKGFWDARPMDAYEDKVGEYADTK TGPAKRRGERSSTKIVEPDLREDEWELPIDYL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38570			unknown protein		Lus10022733 [exp]	0	1
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036099 [exp]	2.0	0.9115
AT1G54730			Major facilitator superfamily ...		Lus10029964 [exp]	4.5	0.8897
AT1G21350			Thioredoxin superfamily protei...		Lus10018916 [exp]	5.5	0.8418
AT1G54680			unknown protein		Lus10033821 [exp]	7.1	0.8814
AT1G69630			F-box/RNI-like superfamily pro...		Lus10029588 [exp]	7.5	0.7916
AT5G61280			Remorin family protein (.1)		Lus10034714 [exp]	11.0	0.8389
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10030053 [exp]	12.0	0.8693
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Lus10020439 [exp]	12.1	0.8622
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10024176 [exp]	12.3	0.8494
AT5G20220			zinc knuckle (CCHC-type) famil...		Lus10036722 [exp]	12.7	0.8659

Compare expression of checked genes

Lus10022733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.