Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01910 107 / 3e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014179 [exp] 288 / 4e-100 AT5G01910 115 / 3e-32 unknown protein Lus10025130 [exp] 177 / 4e-56 AT5G01910 105 / 1e-28 unknown protein Lus10025214 [exp] 171 / 9e-54 AT5G01910 104 / 2e-28 unknown protein Lus10035364 [exp] 130 / 1e-39 AT5G01910 44 / 1e-06 unknown protein Lus10001909 [exp] 47 / 6e-06 AT4G11080 496 / 2e-173 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10003904 [exp] 47 / 6e-06 AT4G11080 506 / 2e-177 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10032379 [exp] 46 / 1e-05 AT4G11080 481 / 1e-167 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G138300 [exp] 148 / 7e-45 AT5G01910 122 / 2e-35 unknown protein Potri.006G109400 [exp] 143 / 7e-43 AT5G01910 96 / 6e-25 unknown protein Potri.003G138000 [exp] 51 / 1e-07 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022734 pacid=23178545 polypeptide=Lus10022734 locus=Lus10022734.g ID=Lus10022734.BGIv1.0 annot-version=v1.0 ATGCCGCCGGTCCAATCTCCACTCGCCGGAGACCGAAAGCCCAAGCCAAAAAATGGCCGGACGCCTCTACAACCCAAGAACTCCAACCCCATTTCCAAAC CATCCCCAAACCCCATTCCGGTCAAGATGGAGACTTTTCGGGCACCATCGGACAAGGACAACGACAAGGAGAACCATCTTCACCCCCCGGTTCGAACAAC TCCGATTATCAGTAAGCTCATACAGTCGATCATTGATCCGTCGCTGGCGGAGGAGCTGAGTGCGATGCGGAAGAGGATGGAGAGGCTGAGGTTGGACGGA GAGAAGACAGAGAAGATGCTAAATGAGAGAGAAAAGCTGTTGGATTTGCGGATGAAGGAGCTCGAGATTCGAGGAGAAGCTCAGATGATGATGGAGCTCG AAGTGGATCGATTGTTCAGATTGAAGGAACTCCATTCTTTCTCCATGAGGGTTTCTCCCATTCGGTCGCTGCGAGATAAGGAACACGAGAAAAGAACAAC AAGTCAACGCTACGAGGGAGGAGAAGAAGCTACGCAGCGTGGGAATGAGAGTCCCTGCTGTTCAAGCACAAGCTCCAACTCTGTTTCAACCCCAATGGCT GCAGTTGCTGTTGTTTAG
AA sequence Show only first row Show all	>Lus10022734 pacid=23178545 polypeptide=Lus10022734 locus=Lus10022734.g ID=Lus10022734.BGIv1.0 annot-version=v1.0 MPPVQSPLAGDRKPKPKNGRTPLQPKNSNPISKPSPNPIPVKMETFRAPSDKDNDKENHLHPPVRTTPIISKLIQSIIDPSLAEELSAMRKRMERLRLDG EKTEKMLNEREKLLDLRMKELEIRGEAQMMMELEVDRLFRLKELHSFSMRVSPIRSLRDKEHEKRTTSQRYEGGEEATQRGNESPCCSSTSSNSVSTPMA AVAVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01910			unknown protein		Lus10022734 [exp]	0	1
AT4G35930			F-box family protein (.1)		Lus10028422 [exp]	2.0	0.9508
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	2.0	0.9535
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10026880 [exp]	4.6	0.9505
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	6.5	0.9381
AT3G18630		ATUNG	uracil dna glycosylase (.1)		Lus10012898 [exp]	6.7	0.9312
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10013465 [exp]	7.1	0.9427
AT3G09000			proline-rich family protein (....		Lus10004824 [exp]	8.6	0.8857
AT4G22860			Cell cycle regulated microtubu...		Lus10007022 [exp]	8.9	0.9179
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Lus10042585 [exp]	9.0	0.9125
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10035331 [exp]	9.5	0.9207

Compare expression of checked genes

Lus10022734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.