Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38560 362 / 4e-124 RDO2, TFIIS REDUCED DORMANCY 2, transcript elongation factor IIS (.1) AT2G42730 126 / 9e-32 F-box family protein (.1.2) AT4G18720 110 / 5e-28 Transcription factor IIS protein (.1) AT5G42325 96 / 6e-23 Transcription factor IIS protein (.1) AT5G25520 65 / 3e-11 SPOC domain / Transcription elongation factor S-II protein (.1.2) AT2G25640 62 / 2e-10 SPOC domain / Transcription elongation factor S-II protein (.1) AT5G11430 60 / 1e-09 SPOC domain / Transcription elongation factor S-II protein (.1) AT2G33300 55 / 2e-08 Transcription elongation factor (TFIIS) family protein (.1) AT2G33090 51 / 3e-07 Transcription elongation factor (TFIIS) family protein (.1) AT2G13640 51 / 5e-07 Transcription factor IIS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014178 [exp] 642 / 0 AT2G38560 384 / 1e-132 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10025131 [exp] 416 / 1e-145 AT2G38560 387 / 6e-134 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10025215 [exp] 413 / 2e-144 AT2G38560 384 / 8e-133 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10034247 [exp] 287 / 1e-95 AT2G38560 295 / 1e-98 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10029016 [exp] 133 / 4e-37 AT2G38560 131 / 1e-36 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10029017 [exp] 69 / 8e-14 AT2G38560 70 / 1e-14 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10008108 [exp] 61 / 1e-09 AT5G11430 559 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1) Lus10013146 [exp] 59 / 4e-09 AT5G11430 550 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1) Lus10008492 [exp] 46 / 3e-05 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G138100 [exp] 403 / 9e-141 AT2G38560 402 / 3e-140 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Potri.006G109300 [exp] 396 / 7e-138 AT2G38560 393 / 2e-136 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Potri.006G246800 [exp] 65 / 3e-11 AT5G25520 536 / 1e-173 SPOC domain / Transcription elongation factor S-II protein (.1.2) Potri.018G034500 [exp] 63 / 1e-10 AT5G25520 513 / 1e-164 SPOC domain / Transcription elongation factor S-II protein (.1.2) Potri.001G307600 [exp] 43 / 0.0002 AT5G09850 336 / 4e-114 Transcription elongation factor (TFIIS) family protein (.1) Potri.019G003900 [exp] 43 / 0.0002 AT5G09850 322 / 7e-109 Transcription elongation factor (TFIIS) family protein (.1) Potri.012G015900 [exp] 39 / 0.0006 AT4G07950 124 / 5e-38 DNA-directed RNA polymerase, subunit M, archaeal (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07500 [flax] [poplar] TFIIS_M Transcription factor S-II (TFIIS), central domain CL0167 [flax] [poplar] Zn_Beta_Ribbon PF01096 [flax] [poplar] TFIIS_C Transcription factor S-II (TFIIS) CL0167 [flax] [poplar] PF08711 [flax] [poplar] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Lus10022735 pacid=23178557 polypeptide=Lus10022735 locus=Lus10022735.g ID=Lus10022735.BGIv1.0 annot-version=v1.0 ATGCCTCCTCCTCTCGGCCCATTGGAGGTAGAGCTGATTGAATTATTCCAGTCCGCTAAGAAAGCCGGCGATGACGCCTTCGGGGACGATATCGCCTCCG ACGGTCCAGAGGTCGAGCGATGTGTTGACGCACTCAAACTGCTCGAGAAATTCCCAGTTACTTTCGAGATTCTCTCTTCCACTCAGGTCGGGAAACGACT ACGGACTCTAACCAAGCATCCAATTGCAAGGATCCAAAACATGGCTTCAGACTTGCTTGATCGTTGGAAGAAATTAGTCCTTGATGAGTCCAGTAAAAGG AAAGCTCAAGTAAGTTCACCTGAAAATGGCGCGAAACCACTCATACCATCTAGTGCTACTAAAGCAGGAAAACCATCCACAGCTGCTAAAGCAGACAAAC CATCCAATGCTGGAGCTGTCAAAATCGATATCAAGGATCGGACGTCAAATGGGAAGATGGAGAAAACAAAGGTGGAGAAAGAACCTTCCCCTTCAAAGAA ACCACAACAGGGAGCACCTACTCCTCGTCCGAGGCACAGTTCCCTGCTGGCGAAATGCAACGACCCCTTGAGGGACAAAGTCCGTGAGCTTCTCGCAGAG GCCCTTGAAAAGGTTTTCAGAGAGGCCGACGATCATCACAAGGACGAAGTGAACTCCTGCGACCCTCTCCACGTTGCTGTATCGGTGGAATCTGCAATGT ATGCAAAGTTGGGTAAGTCGAATGGCGCTGAGAAGTTCAAGTACAGATCAATAATGTTCAACATCAAGGATCCGAAGAACCCGGATCTTAGGAGGAGAGT GCTGCTGGGGCAAGTCAAACCCGAGAGGCTCATTACAATGACCCCGGAAGAAATGGCGAGTGACGAAAGACAGCAAGAGATTAAGCAAATAAAAGATAAA GCACTATTTGACGCTGAGCGTGGTGGTCCAGCCAAGGCCACGACCGATCAGTTCAAGTGTGGACGTTGTGGTCAGAGGAAATGTACCTACTACCAGATGC AGACAAGGAGTGCCGATGAGCCCATGACCACTTACGTAACTTGTGTAAACTGTGACAACCACTGGAAGTTCTGTTAG
AA sequence Show only first row Show all	>Lus10022735 pacid=23178557 polypeptide=Lus10022735 locus=Lus10022735.g ID=Lus10022735.BGIv1.0 annot-version=v1.0 MPPPLGPLEVELIELFQSAKKAGDDAFGDDIASDGPEVERCVDALKLLEKFPVTFEILSSTQVGKRLRTLTKHPIARIQNMASDLLDRWKKLVLDESSKR KAQVSSPENGAKPLIPSSATKAGKPSTAAKADKPSNAGAVKIDIKDRTSNGKMEKTKVEKEPSPSKKPQQGAPTPRPRHSSLLAKCNDPLRDKVRELLAE ALEKVFREADDHHKDEVNSCDPLHVAVSVESAMYAKLGKSNGAEKFKYRSIMFNIKDPKNPDLRRRVLLGQVKPERLITMTPEEMASDERQQEIKQIKDK ALFDAERGGPAKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNCDNHWKFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10022735 [exp]	0	1
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Lus10025698 [exp]	2.4	0.8419
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10042699 [exp]	5.2	0.7941
AT5G41120			Esterase/lipase/thioesterase f...		Lus10012560 [exp]	5.7	0.8332
AT1G06450			Polynucleotidyl transferase, r...		Lus10017894 [exp]	6.5	0.7803
AT3G24530			AAA-type ATPase family protein...		Lus10023642 [exp]	7.0	0.7982
AT3G19340			Protein of unknown function (D...		Lus10035127 [exp]	7.1	0.8376
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Lus10034596 [exp]	8.5	0.8102
AT4G01995			unknown protein		Lus10016264 [exp]	9.8	0.7971
AT3G48040		ROP10, ARAC8, A...	Arabidopsis RAC-like 8, RHO-re...		Lus10033411 [exp]	13.6	0.7609
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10040777 [exp]	18.8	0.8097

Compare expression of checked genes

Lus10022735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.