Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01900 89 / 9e-21 WRKY ATWRKY62, WRKY62 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1) AT3G56400 86 / 4e-19 WRKY ATWRKY70, WRKY70 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) AT1G66600 82 / 4e-18 WRKY ABO3, ATWRKY63, WRKY63 WRKY DNA-binding protein 63, ABA overly sensitive mutant 3 (.1) AT5G22570 81 / 2e-17 WRKY ATWRKY38, WRKY38 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY DNA-binding protein 38 (.1) AT2G40740 81 / 2e-17 WRKY ATWRKY55, WRKY55 WRKY DNA-binding protein 55 (.1.2) AT1G66560 79 / 3e-17 WRKY ATWRKY64, WRKY64 WRKY DNA-binding protein 64 (.1) AT5G24110 80 / 5e-17 WRKY ATWRKY30, WRKY30 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) AT4G23810 80 / 6e-17 WRKY ATWRKY53, WRKY53 WRKY family transcription factor (.1) AT1G66550 78 / 2e-16 WRKY ATWRKY67, WRKY67 WRKY DNA-binding protein 67 (.1.2) AT2G40750 75 / 3e-15 WRKY ATWRKY54, WRKY54 WRKY DNA-binding protein 54 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014177 [exp] 372 / 6e-130 AT3G56400 105 / 3e-26 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10025216 [exp] 133 / 1e-36 AT3G56400 123 / 8e-33 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10025133 [exp] 131 / 9e-36 AT3G56400 114 / 2e-29 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10012870 [exp] 103 / 1e-25 AT3G56400 153 / 1e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10029021 [exp] 96 / 5e-23 AT3G56400 149 / 3e-43 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10030517 [exp] 95 / 3e-22 AT3G56400 162 / 5e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10034244 [exp] 93 / 1e-21 AT3G56400 151 / 6e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10001902 [exp] 80 / 9e-17 AT4G11070 210 / 6e-66 WRKY family transcription factor (.1.2) Lus10023099 [exp] 78 / 4e-16 AT4G11070 235 / 3e-75 WRKY family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109100 [exp] 110 / 8e-28 AT3G56400 129 / 4e-35 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.016G137900 [exp] 97 / 6e-23 AT3G56400 127 / 2e-34 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.013G090300 [exp] 87 / 3e-19 AT3G56400 172 / 1e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.014G096200 [exp] 87 / 3e-19 AT4G23810 170 / 7e-50 WRKY family transcription factor (.1) Potri.003G138600 [exp] 81 / 4e-17 AT4G11070 234 / 5e-75 WRKY family transcription factor (.1.2) Potri.012G031700 [exp] 81 / 5e-17 AT5G24110 196 / 4e-60 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) Potri.002G168700 [exp] 79 / 1e-16 AT2G46400 170 / 3e-50 WRKY DNA-binding protein 46 (.1) Potri.001G092900 [exp] 76 / 1e-15 AT4G11070 238 / 8e-77 WRKY family transcription factor (.1.2) Potri.003G169100 [exp] 72 / 3e-15 AT5G13080 168 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.001G058800 [exp] 70 / 2e-14 AT5G13080 171 / 2e-55 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10022736 pacid=23178547 polypeptide=Lus10022736 locus=Lus10022736.g ID=Lus10022736.BGIv1.0 annot-version=v1.0 ATGGAAAACCAGACCGCCGTTGACGAGCTCCAGAGAGGCCACGCCTTCACCAGCCAGCTCAAGCTCCTCCTCGACACTACTGCCGATTTCAAATCTCAGG GCGATGGATCTGCCGACGATCTCGTCGCCCGGATCTTGTCGACGTTTACTCACAGTCTCTCCTTGTTGACCAGCATTAATAATGCAGACGACCAAGAAGA CGAGTCTGGCCGGAAGTCCGAGGGCTCTTCCGGCGATGGAAACAAGAGATCCACTAGGAGGAAGCAGAAACGGCCTTCGCCGTATTCGTGGGTGAAGGAC AGTACAAATCTGGTAGACGACGGTTACGGGTGGAGGAAGTACGGCCATAAGAACATTATCAAATCGGAGTTTCCGAGGTTGTACTACCGATGCACGCACA AAAAGGAGCAGAACTGCCAAGCCACGAAGCAAGTCCAAATGATCACCCAACGTGACTCTCCGGACCAATTAATCTACCGCACGACTTACTACAGCCGCCA CACGTGTAACAACAACGGCGGCCGTCGGATAATGTTGCAGGAGGACGAACCGGTCGATTACTTGGCAGGTTGCCACGTCATCAGCTTCGGCAAACAAGGA GGACAGCTTGATGATCATGACGTGATGAGTAGATCTTTTTCTCCGCCGTCGTTTGCGGCAGCGGCCACGTCGGATGTGGTTGGAGGGGAAATGGATAAAT TGGGTGATGACCTGGACGGAAGTGGTGGTAAGATGACTGGGATTAACGATGCTATTCATCAGGGTGCCAACTCAGCATCATCGGACGACTCATGCTCCAA CGGCAGTAGCAGTGATGATTTCATGCGAATGATGATGATGACGAGGATGGAGTCTTTCAATGATTTCGAAACGCTGCTCGGTTTGAACTGCTAG
AA sequence Show only first row Show all	>Lus10022736 pacid=23178547 polypeptide=Lus10022736 locus=Lus10022736.g ID=Lus10022736.BGIv1.0 annot-version=v1.0 MENQTAVDELQRGHAFTSQLKLLLDTTADFKSQGDGSADDLVARILSTFTHSLSLLTSINNADDQEDESGRKSEGSSGDGNKRSTRRKQKRPSPYSWVKD STNLVDDGYGWRKYGHKNIIKSEFPRLYYRCTHKKEQNCQATKQVQMITQRDSPDQLIYRTTYYSRHTCNNNGGRRIMLQEDEPVDYLAGCHVISFGKQG GQLDDHDVMSRSFSPPSFAAAATSDVVGGEMDKLGDDLDGSGGKMTGINDAIHQGANSASSDDSCSNGSSSDDFMRMMMMTRMESFNDFETLLGLNC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01900	WRKY	ATWRKY62, WRKY6...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10022736 [exp]	0	1
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10035840 [exp]	2.2	0.9625
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10026894 [exp]	4.0	0.9021
AT4G34150			Calcium-dependent lipid-bindin...		Lus10027875 [exp]	5.2	0.9335
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10017554 [exp]	5.5	0.9400
AT1G06450			Polynucleotidyl transferase, r...		Lus10035078 [exp]	8.2	0.9318
AT3G20600		NDR1	non race-specific disease resi...		Lus10011162 [exp]	8.5	0.9198
AT1G06450			Polynucleotidyl transferase, r...		Lus10000327 [exp]	8.7	0.9283
AT1G64700			unknown protein		Lus10008274 [exp]	10.9	0.9185
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10003666 [exp]	11.0	0.8810
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10015587 [exp]	12.0	0.9144

Compare expression of checked genes

Lus10022736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.