Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01890 971 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G56370 942 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G28040 676 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G12460 401 / 2e-125 Leucine-rich repeat protein kinase family protein (.1) AT1G62950 400 / 7e-125 leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G36180 377 / 7e-114 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 361 / 3e-109 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G51740 340 / 6e-103 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT2G33170 344 / 6e-102 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G53890 341 / 1e-101 AtPSKR2 phytosylfokine-alpha receptor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014174 [exp] 1649 / 0 AT5G01890 1032 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025223 [exp] 1036 / 0 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025139 [exp] 1035 / 0 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012877 [exp] 951 / 0 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030526 [exp] 944 / 0 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035687 [exp] 549 / 3e-180 AT3G28040 1021 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10037276 [exp] 548 / 8e-180 AT3G28040 1013 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10006675 [exp] 424 / 8e-134 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004266 [exp] 353 / 3e-106 AT4G36180 1061 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G137000 [exp] 1142 / 0 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G108600 [exp] 1106 / 0 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G091000 [exp] 1022 / 0 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 1004 / 0 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G147300 [exp] 706 / 0 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G233600 [exp] 672 / 0 AT3G28040 1116 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G114500 [exp] 437 / 2e-138 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G117500 [exp] 412 / 2e-129 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G235100 [exp] 360 / 8e-108 AT1G75640 1231 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.008G140500 [exp] 350 / 5e-104 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10022738 pacid=23178523 polypeptide=Lus10022738 locus=Lus10022738.g ID=Lus10022738.BGIv1.0 annot-version=v1.0 ATGTCCCATTCCAACATGCTCTTCACCCTTTTCTTCTTACTGCTGCTGCGACACTCTGTTGTAACCCACTCTGCCTACCAAACCTTAAATGACGACGTTT TGGGGCTCATCGTCTTCAAAGCGGCCCTCGTCGACCCGGACTCTGTACTCGCCTCGTGGAACGAAGAAGACGATACTCCTTGCTTTTGGTTCGGAGTGAA ATGCGACCCGTTTACCCGTCGGGTCACCGATGTCTCCCTCGATAACTGCTCCTTGTCCGGCCACGTCGGCAGGGGACTCCTCCGGTTGCAGTCTTTACGA AAGCTTTCGCTTTCGGGGAACAACTTGACGGGTTTGATTAACCCGGATTTGACCCGGATGCTACCGGAGTTGGGACTGGTTGACTTCAGCGGCAACGGAT TCTCCGGGTCGATTCCGGAGGATCTTTTCCAGCAATGCGGGTCTTTAACCTACGTTTCTTTAGCCGGAAATGGTCTTGAAGGTGAGATTCCGGATTCGTT GACTTCGTGCTTCGGTTTGACCCATTTGAATTTCTCGTCCAATCGGGTCTCCGGCGGGTTTCCGTCCGGGGTGTGGAACTTGAGGAGCTTGCAGATGCTC GATTTTTCTGGTAATTTGTTGGATGGTGAGATTCCACTAGGGGTTTCCAACTTGTATGATCTGAGACAGATTGCTTTGAATAACAATAAATTTTCCGGTG AGCTTCCGGTGGATATCGGCAGCTGCTCGCTTCTTGAGAAGGTGGATTTCGCCGGAAATTTTTTCTCCGGTGGAGTTCCTGAATCGATTCGGAAACTTAA TTCTTGCAATGAGCTGAGATTAGGAGGGAATCAGCTGACTGGGTTTATCCCCGGATGGTTTGGCGAATTGAAAACTATAGAAAGGTTAGATCTTTCAATG AACCGGTTTTCTGGTCGGATTCCTGGATCAATTGGGGATATGAGCAAGCTGAAGGAGCTGAATCTGTCAATGAACCAGCTCAATGGCGGATTACCCTATT CGATTTCGAATTGCGTAAATCTTCTGAGCTTGGATTTGAGAGGTAACCAGCTTAATGGTGATGTTCCTTCTTGGCTGTTTAAAGATGGTTTGGTTCTTGA AACGCTGGATGTTTCTTCAAATGGGTTGTCTGGTGAGATCCCATTTGATTTTAGTAGCAGCAGCATTTTGGTTCTGAATCTGTCCAGAAATCAGCTATTC GGTTCGATCCCATCAACCATTGGTCAGCTCAAATCTGTTCAAGTTGTTGATTTCAGTAGCAACAAACTCACTGGGGAAATCCCTTCTGAGATTTGTTATG CTGCGTTGCTTGATCTCAGATTAGACCACAACTTCCTCACCGGGAACCTTCCGGCTCGAATCGATAACTGCTCTTCACTCACATCTCTGATGTTATCTAA GAACAACTTCACAGGTGAAATACCAGCATCCATTACAAACCTAACCAACCTGCAATTTGTGGACTTATCATTCAACAACTTCTCCGGAAGCCTACCGAAA GAGCTCGCGAATCTCTCTCGGTTGGCTTCCTTCAATGTCTCCCACAACAGATTAGAAGGTGAGTTACCAGTTGGTGGATTCTTCAACATCATTTCGCCAT CTTCCATCTCAGGCAACCCATCTCTCTGCGGAGCTGCTGTTAACCGTTCGTGTCCTTCCGTGCATCCCAAGCCAATTGTCCTGAACCCCAACTCTTCGAG TCGAAATGGCCCCACTTCATCGAATAATAGTAGCCATCGGAAGATCGCACTAAGTATATCGGCTCTCGTGGCGATCGGTGCTGCTGTTTGTATAATCGCC GGCGTTATAGCCGTGACATTGCTCAACATCCATGTCAGATCTTCCATGGCAAGGATGAATGTAGAAGTTACTACATTGTCCGGCGAGGGAGACGACGGTA ATTTTAGCTGTTCCCCTGATCCGAATTACGGGAAGCTCGTGATGTTCTCCGGCGATGCTGAGTTTGTTGCCGGCGGTCAGGCATTGCTGAACAAGGACTG CGAAATCGGCCGCGGAGGGTTTGGCGTGGTTTACAAGACCTCGCTTCGCGATGGGAGATCCGTCGCTATCAAGAAGCTAACTGCGTCGAGCTTGATCAAG TCCCAAGTCGAATTCGAGACCGAAGTGATGAAGCTAGGGAAGGCCGGCACGCATTACAATGTGGTTGCATTGGAAGGGTATTACTGGACTCCGTCTTTGC AGTTGTTGATCTACGAGTACGTATCAGATCGTAGCTTGTACAAACGCCTCCACGAAAGATCGTCGGCGCGATGCCTGACGTGGCGAGAGAGGTTCAACAT TGTGATCGGGATGGCGAAAGGGTTAGCACATCTACATAAGATGAGCATAATCCACTACAATCTCAAATCGACCAACGTGCTGGTGGACGACGAATCGGGG GAAGCGAAAGTGGGAGACTATGGTCTAGCGAGGCTGCTCCCCACGCTAGACCGGTGCATCCTCAGCAGCAAGATGCAGAGCGCGTTGGGGTACATGGCTC CGGAATTTGCGTGCAAGACGGTTAAGATAACGGAGAAATGCGACGTGTACGGGTTCGGAGTGTTGGTTCTCGAAGTGGTGACGGCGAGAAGGCCCGTGGA GTACATGGAGGACGATGTTGTGGTCCTGAGCGACACGGTCCGAGGAGCGTTGGAAGGCGGGAAGGTCGAGGAGATTGTGGATCCGAACCTGAGAGGGAAT TTCCCGGCAGATGAAGTGATACCATTGGTGAAACTCGGTTTGATCTGTGCGTCGCAAGTGCCATCGAACCGGCCTGATATGGAGGAAGTTTTGAACATAT TGGATATGATTCAGTGCCCTGCAGAAGGGCAAGAAGTAGTCCTTGAATGA
AA sequence Show only first row Show all	>Lus10022738 pacid=23178523 polypeptide=Lus10022738 locus=Lus10022738.g ID=Lus10022738.BGIv1.0 annot-version=v1.0 MSHSNMLFTLFFLLLLRHSVVTHSAYQTLNDDVLGLIVFKAALVDPDSVLASWNEEDDTPCFWFGVKCDPFTRRVTDVSLDNCSLSGHVGRGLLRLQSLR KLSLSGNNLTGLINPDLTRMLPELGLVDFSGNGFSGSIPEDLFQQCGSLTYVSLAGNGLEGEIPDSLTSCFGLTHLNFSSNRVSGGFPSGVWNLRSLQML DFSGNLLDGEIPLGVSNLYDLRQIALNNNKFSGELPVDIGSCSLLEKVDFAGNFFSGGVPESIRKLNSCNELRLGGNQLTGFIPGWFGELKTIERLDLSM NRFSGRIPGSIGDMSKLKELNLSMNQLNGGLPYSISNCVNLLSLDLRGNQLNGDVPSWLFKDGLVLETLDVSSNGLSGEIPFDFSSSSILVLNLSRNQLF GSIPSTIGQLKSVQVVDFSSNKLTGEIPSEICYAALLDLRLDHNFLTGNLPARIDNCSSLTSLMLSKNNFTGEIPASITNLTNLQFVDLSFNNFSGSLPK ELANLSRLASFNVSHNRLEGELPVGGFFNIISPSSISGNPSLCGAAVNRSCPSVHPKPIVLNPNSSSRNGPTSSNNSSHRKIALSISALVAIGAAVCIIA GVIAVTLLNIHVRSSMARMNVEVTTLSGEGDDGNFSCSPDPNYGKLVMFSGDAEFVAGGQALLNKDCEIGRGGFGVVYKTSLRDGRSVAIKKLTASSLIK SQVEFETEVMKLGKAGTHYNVVALEGYYWTPSLQLLIYEYVSDRSLYKRLHERSSARCLTWRERFNIVIGMAKGLAHLHKMSIIHYNLKSTNVLVDDESG EAKVGDYGLARLLPTLDRCILSSKMQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTARRPVEYMEDDVVVLSDTVRGALEGGKVEEIVDPNLRGN FPADEVIPLVKLGLICASQVPSNRPDMEEVLNILDMIQCPAEGQEVVLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01890			Leucine-rich receptor-like pro...		Lus10022738 [exp]	0	1
AT5G01890			Leucine-rich receptor-like pro...		Lus10014174 [exp]	1.0	0.9616
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Lus10028752 [exp]	3.9	0.9278
AT2G41770			Protein of unknown function (D...		Lus10031076 [exp]	6.3	0.9368
AT2G01970			Endomembrane protein 70 protei...		Lus10042286 [exp]	7.5	0.9304
AT4G17180			O-Glycosyl hydrolases family 1...		Lus10039095 [exp]	8.5	0.9095
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10006612 [exp]	8.9	0.9073
AT4G35240			Protein of unknown function (D...		Lus10012276 [exp]	10.8	0.9298
AT1G16860			Ubiquitin-specific protease fa...		Lus10033374 [exp]	11.4	0.8945
AT3G10700		GalAK	galacturonic acid kinase (.1)		Lus10014251 [exp]	11.6	0.8937
AT2G41770			Protein of unknown function (D...		Lus10035458 [exp]	12.3	0.9198

Compare expression of checked genes

Lus10022738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.