Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39710 145 / 9e-38 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 141 / 2e-36 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G64320 132 / 1e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 129 / 2e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09680 128 / 3e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46100 127 / 3e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G64583 127 / 3e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62680 126 / 9e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 126 / 1e-31 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12620 126 / 2e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014170 [exp] 592 / 0 AT1G09680 154 / 2e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 142 / 8e-37 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 142 / 2e-36 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 140 / 3e-36 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040633 [exp] 136 / 1e-34 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036506 [exp] 126 / 3e-31 AT2G16880 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029737 [exp] 124 / 1e-30 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013894 [exp] 124 / 2e-30 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 123 / 2e-30 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136700 [exp] 285 / 3e-91 AT1G62680 175 / 4e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G068400 [exp] 139 / 5e-37 AT3G22470 300 / 8e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 136 / 1e-34 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 130 / 5e-33 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G150100 [exp] 129 / 8e-33 AT1G62930 442 / 8e-149 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G124900 [exp] 130 / 1e-32 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G144300 [exp] 128 / 3e-32 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271200 [exp] 128 / 3e-32 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G090400 [exp] 128 / 6e-32 AT5G28460 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G131400 [exp] 127 / 6e-32 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022739 pacid=23178623 polypeptide=Lus10022739 locus=Lus10022739.g ID=Lus10022739.BGIv1.0 annot-version=v1.0 ATGATACCTCCGCCGCCGTCAACGCTTCTCCATTCTCCTCCTCCAACTCTTCCTCTCTGTAACAATTACAACCGCCGCTACATTACTTCCAGATTCCCAA CAACGGGAGCCGCCGTCGATTCCCTCCCAACAACCAAAACGTCTTCTTCTTCTACTTCTTCAACCAGACGCCACAACTGCACAACCTTACCCTCCCAAAC CAAAACTAAGAACACAACCACACGATTACTCGGCCGAGCGCTGACCACCCTACTAAAAGATTCAAACTCTGACTCAGCCGAAATGATTCTAAACCAAATG GTCGAGAACGGCTTTACTTGTTCCCCACCGGATGTTACAGTGTTCACTGCATTAGTCGACTGTTTCTGCAAAAGGGGGAAACTCCAGAAAGCGTATCAAG TGATCGAATTAATGGCGAAATTCGGGTTAGGCCCCTCTATTCAGACCTACAATTGCTTGATCAAAGGATTGTGTTACGTCGGGAGAGTTGAACAAGCGTT TCAATTGCTGGGAGATATAAAGAAGAAGGGAGAAACTGATACAGTACTACCGGATATTTATACTTACACTGTGATGATGGACGGATTCTGCAAAGTCGGT CGATCGGACGAAGCAATGGAACTGCTGGATGAAGCTATGGAGAAAGGACTGAAGCCGAATTCAGTCAGTTTCAATGCTCTGTTCCATGGCTATAATGTGG AGGGAAGGCCATTGGAAGGGATGAAACTGTTGCAGCGGATTAAAATGAAGGGTTTTGAACCTGATTATGTCTGTTACAGTACTCTATCGGGAGTTGCACG CCAGGTGTTTGATGAAATGACTGAAAGAGGTTTCGCGATGGATCGGAGAGCTTGTGATGTGTTCATCGGACAGCTTTGCCGGCTCAGGAATGGCGTGGAC GCGGTGGCGAAGTTGGAACGGATGGTTGAGTTTGGGTACGCGGTGAGAGAAGAGACGATGGAGGTTGTGCTTCGAGCGCTTTGCCTGGAGGGAGAAGCAA CCAAGGCAGCAGGTATTTTGGTTCTCATGTTTGAGAACCGTGTAATTCCGTCGAGGTTGTCATACGAGGTTTTGATCGACGAACTGAATCGACAACGTTG GCATTTGGAGGGTAGTTGCGTCTATGGCGCGTCAGTTGTTCGAGGTGTGGCTCGAAGATATACGAGCGAGATTGCTCAAAGTTCTAACGCAGTAGCAACA ATGTATTAA
AA sequence Show only first row Show all	>Lus10022739 pacid=23178623 polypeptide=Lus10022739 locus=Lus10022739.g ID=Lus10022739.BGIv1.0 annot-version=v1.0 MIPPPPSTLLHSPPPTLPLCNNYNRRYITSRFPTTGAAVDSLPTTKTSSSSTSSTRRHNCTTLPSQTKTKNTTTRLLGRALTTLLKDSNSDSAEMILNQM VENGFTCSPPDVTVFTALVDCFCKRGKLQKAYQVIELMAKFGLGPSIQTYNCLIKGLCYVGRVEQAFQLLGDIKKKGETDTVLPDIYTYTVMMDGFCKVG RSDEAMELLDEAMEKGLKPNSVSFNALFHGYNVEGRPLEGMKLLQRIKMKGFEPDYVCYSTLSGVARQVFDEMTERGFAMDRRACDVFIGQLCRLRNGVD AVAKLERMVEFGYAVREETMEVVLRALCLEGEATKAAGILVLMFENRVIPSRLSYEVLIDELNRQRWHLEGSCVYGASVVRGVARRYTSEIAQSSNAVAT MY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10022739 [exp]	0	1
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10023783 [exp]	4.9	0.8422
AT5G38510			Rhomboid-related intramembrane...		Lus10000628 [exp]	5.1	0.8751
					Lus10033476 [exp]	6.2	0.8696
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10010959 [exp]	7.9	0.8349
AT3G47570			Leucine-rich repeat protein ki...		Lus10017400 [exp]	8.2	0.8508
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10042106 [exp]	8.4	0.8712
AT3G44670			Disease resistance protein (TI...		Lus10015465 [exp]	8.9	0.8121
AT5G46090			Protein of unknown function (D...		Lus10015396 [exp]	12.2	0.8469
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10005245 [exp]	12.2	0.7983
AT1G13810			Restriction endonuclease, type...		Lus10033589 [exp]	15.0	0.8016

Compare expression of checked genes

Lus10022739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.