Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08740 311 / 5e-108 elongation factor P (EF-P) family protein (.1) AT4G26310 93 / 9e-23 elongation factor P (EF-P) family protein (.1), elongation factor P (EF-P) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136600 [exp] 344 / 3e-121 AT3G08740 322 / 1e-112 elongation factor P (EF-P) family protein (.1) Potri.001G004300 [exp] 78 / 5e-17 AT4G26310 249 / 3e-83 elongation factor P (EF-P) family protein (.1), elongation factor P (EF-P) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01132 [flax] [poplar] EFP Elongation factor P (EF-P) OB domain CL0021 [flax] [poplar] OB PF09285 [flax] [poplar] Elong-fact-P_C Elongation factor P, C-terminal CL0107 [flax] [poplar] KOW PF08207 [flax] [poplar] EFP_N Elongation factor P (EF-P) KOW-like domain
Representative CDS sequence Show only first row Show all	>Lus10022740 pacid=23178629 polypeptide=Lus10022740 locus=Lus10022740.g ID=Lus10022740.BGIv1.0 annot-version=v1.0 ATGGCGGCGACATCATCCTTCACCGTCGCCTACTCAAATCCCATCTCCCACTCTTCACTCTCTTCCTCGCTTTCCTTCTCCACGACGAAGCCTTTCCTCC TTCCAATCCGACGGCGAACGCCTTCCCGCTTCCCAAAGATTTACGCTCTAACTAGCAATGACATCAAAGTGGGCACCCAAATCGAAGTCGACGGCGCTCC CTGGCGAGTATTGGAGTTTCTTCATGTGAAGCCCGGGAAAGGGGCGGCATTCGTCAGGACGAAGATGCGCAATTACATCACTGGGAACACCGTCGAGAAG ACTTTCCGTGCTGGGAGTTCGCTTGAGGAGGCGGATGTAGTGAAGGAAACAAAGCAGTATACATATAAAGATGGAGATCAGTATGTCTTCATGGACCTGA CAACGTTTGAAGAATACCGCGTGAGTGAGTCGGAAGTTGGAGATAAGATGAAGTGGCTGAAAGAGGGAATGGATTGCAATTTGCTATTCTGGAAAGGCAA GGTTATTGATTTCGATCTCCCGATGAATGTACACCTAACTGTCGTTTCTGTCGATCCCGGCATTCGAGGCGACACTGCTCAAGGTGGAAGTAAACCGGCG ACCCTAGACACAGGTGCAATAGTCAACGTTCCCCTCTTCGTTCATGAAGGCGACGATATAGTGGTTGACACAAGAACCGGACAGTACATGAGCCGGGTGT CGAAATGA
AA sequence Show only first row Show all	>Lus10022740 pacid=23178629 polypeptide=Lus10022740 locus=Lus10022740.g ID=Lus10022740.BGIv1.0 annot-version=v1.0 MAATSSFTVAYSNPISHSSLSSSLSFSTTKPFLLPIRRRTPSRFPKIYALTSNDIKVGTQIEVDGAPWRVLEFLHVKPGKGAAFVRTKMRNYITGNTVEK TFRAGSSLEEADVVKETKQYTYKDGDQYVFMDLTTFEEYRVSESEVGDKMKWLKEGMDCNLLFWKGKVIDFDLPMNVHLTVVSVDPGIRGDTAQGGSKPA TLDTGAIVNVPLFVHEGDDIVVDTRTGQYMSRVSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08740			elongation factor P (EF-P) fam...		Lus10022740 [exp]	0	1
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Lus10035678 [exp]	1.4	0.9571
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10014534 [exp]	1.7	0.9575
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10030298 [exp]	2.8	0.9518
AT3G54210			Ribosomal protein L17 family p...		Lus10007002 [exp]	4.2	0.9562
AT3G19810			Protein of unknown function (D...		Lus10010214 [exp]	5.3	0.9503
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10009787 [exp]	6.3	0.9516
AT3G54210			Ribosomal protein L17 family p...		Lus10000382 [exp]	8.5	0.9498
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	8.8	0.9508
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Lus10016969 [exp]	9.5	0.9484
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10024781 [exp]	9.9	0.9492

Compare expression of checked genes

Lus10022740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.