Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32010 720 / 0 B3 HSL1, HSI2-L1, VAL2 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) AT2G30470 610 / 0 B3 HSI2, VAL1 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) AT4G21550 207 / 9e-57 B3 HSI2-L2, VAL3 VP1/ABI3-like 3 (.1) AT3G26790 93 / 2e-20 B3 FUS3 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) AT1G28300 81 / 5e-16 B3 LEC2 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) AT3G24650 82 / 6e-16 B3 SIS10, ABI3 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) AT5G06250 77 / 2e-15 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT4G01500 78 / 3e-15 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) AT1G13260 78 / 3e-15 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT1G68840 76 / 2e-14 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025226 [exp] 963 / 0 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025142 [exp] 933 / 0 AT4G32010 794 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10014169 [exp] 565 / 0 AT4G21550 237 / 4e-68 VP1/ABI3-like 3 (.1) Lus10018440 [exp] 404 / 4e-127 AT4G32010 487 / 1e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10011245 [exp] 379 / 3e-115 AT2G30470 399 / 1e-122 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Lus10041521 [exp] 95 / 5e-21 AT3G26790 255 / 1e-83 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10012572 [exp] 91 / 1e-19 AT3G26790 259 / 4e-85 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10022820 [exp] 85 / 4e-17 AT3G24650 313 / 1e-100 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Lus10011888 [exp] 81 / 3e-15 AT3G24650 312 / 6e-96 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136500 [exp] 909 / 0 AT4G32010 789 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.006G108300 [exp] 878 / 0 AT4G32010 743 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.019G130300 [exp] 733 / 0 AT2G30470 757 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.013G157500 [exp] 724 / 0 AT2G30470 767 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.004G035300 [exp] 561 / 0 AT4G32010 483 / 3e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.011G043600 [exp] 482 / 4e-158 AT4G32010 479 / 5e-157 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.017G061200 [exp] 90 / 2e-19 AT3G26790 288 / 8e-97 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.001G322700 [exp] 85 / 9e-18 AT3G26790 279 / 3e-93 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.002G252000 [exp] 83 / 3e-16 AT3G24650 499 / 2e-167 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Potri.011G054000 [exp] 81 / 8e-16 AT1G28300 154 / 5e-43 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07496 [flax] [poplar] zf-CW CW-type Zinc Finger CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10022741 pacid=23178647 polypeptide=Lus10022741 locus=Lus10022741.g ID=Lus10022741.BGIv1.0 annot-version=v1.0 ATGGCGTCGTCCAAGCATTGCATGAATGCATTATGCGGCGCATCCACGTCGAGCGTTTGGATAAAAGGCTGGGGTCTGCGATCTGGAGAATTCGCCAATC TCTGCGATAAGTGCGGGTTGGCATTCGAGCAATCAATCTTCTGTGAAGTATTTCACCCTAAAGATCCTGGATGGAGGGAATGCACGTCATGTGGCAAGCG TCTCCATTGTGGCTGCGTTGCTTCCATACTTCTGGTTGAGCTCTTGGATGACGGTGGCGTAAAATGCTTGAATTGCTATAGAAAATCTGGAGCAAATACT GTCGGGGATGATAAGAAACCTAATGGGTTTGTCAAATCAAGAATTAATGACATCGCTGAAATGCAATCTCTCTCAGCTGAGAACGGAAGAATGGGTGCAA GAAGTTTGCTTCAATCGCATGGTGATGACATCAATGCATCTTTTAGACAGATGAAGCAGCAACTTATTTTCCCCAAAATGGGTGAAACCGGAAGCACAAG TTTCTCACATTTTGACCAAGCATCAAACATACTTTCTCCACCTGTCAAAGATATTGGAGCTAAGGATCTATATGAATCTTTAGCACATACAAATTTTAGT ATGGGGCTTGGTCCTTTAGGGAACTCGTCTCCTTTTGGAATGGTCGTTGATGAAAGGTCCCAGAGTAAAACGCCTCTGGTTCCGGGGTCAAGTTCTCGCC ATCTATTATTCAAGCCTCCAAATATTGCTACAGGTATGGAGCCAAATCATACCATACGCATTGCTAGGCCACCTGCTGAAGGACGGGGAAGATCTCAGTT GCTACCTCGGTATTGGCCTAGGATTACGGACCAAGAACTTCAGCAGATCTCCATGGATCCAAATTCCACCATTTATCCTCTTTTTGAAAAGGTTCTCAGT GCGAGCGATGCTGGTCGTATAGGTCGTTTGGTTCTCCCAAAAGCTTGTGCTGAAGCATATTTTCCACCAATCTCTCAACCAGAGGGCATTCCTCTTAGGA TTCAAGACATAAAGGGGAAAAACTGGGTGTTCCAGTTCAGATTTTGGCCGAATAACAACAGCAGGATGTATGTTTTGGAAGGTGTAACCCCTTGCATTCA GTCCATGCAGTTGCAAGCTGGAGATACAGTAACATTCAGTCGCATAGACCCAGAGAGAAAGCTGATAATGGGATTTAGGAAAGCACCAAACCCTGCCACA ACGCAGGGAAGCAGTGATGCGCACTTAAGTGCAATGTCGAAACATTTTCAGTCGGCTAGTGGTGATACTAGTAGTTGGTTTAAATCTGAGAAGGAGGACA TGTCTCGGGAAGGTTCAATGCAGCCATCCACTCTGGTTCCCGAGAAGAAAAGAGCAAGGAACATTGGAACCAAAAGTAAGAGGCTATCAATGGCCAACCA AGATGCTTCGGAGTTGAAACTTACCTGGGAAGAAGCACAAGATTTGCTCCGCCCTGCACCAACTTCCAAACCAAACATCGTCACCATTGATGATCATGAG TTTGAAGAATACGATGAACCTCCTGTATTCGGAAAGACAAGTATTTTCGTTGTGCACTCTACTGGAACGCAGGAGCAATGGGCAGAGTGCGATAACTGTT CGAAGTGGCGGAAGTTGCCAGTTGATTTTCTTCTTCCACCAAAGTGGACATGCAGTGAAAATACTTGGGATCAGAGCAGGAATTCATGCTCCGTTCCAGA TGAACTGTCCCCAAAGGAATTAGACAATCTCCTCAGACAGAATAAAGATCACAACAAACGGAGACTGACAAGCAAGCAAGGAGGGGCTCAGGAACCCGAA TCCTCTGGACTAGAAGCTTTGGCGAATGTAGCGATCCACGGAGACGTGGGCCCCACCACAACTAAGCATCCACGGCACCGTGCCGGCTGCTCTTGTATTG TGTGCATCCAGCCCCCGAGTGGGAAAGGCAAGCATAAGCCGAATTGCACCTGTAACGTCTGCAAAACAGTGAAACGGCGATTCGAAACTCTACTGAAGCG CAAGAAGAAGCGCCTCTCCGATCGTGAAGCAGAGCTCGCCGCCCAGATGAATCAACAGCAGCAGCAGGAAGGTGAAACTAGCTCGAGAAGTAACCGGAGC AGATCGACGGAGAAACCGCTGGTTGAGAACGGGAAGGGACGCATTGACCTGAATTACTGTCCGGACCGTGAAGAAGACTCCTCTGAAGTTATCGTTAAGA ACCAAATTATGACAATGCTGGACCTTCTTCAAGCAGCCACCAACCACCTTCCGTTGGAGAATTATCGTAACTGTCCGACAAACTTTGCATCAGAGCAAGA GACAGGCTCAACATATCGTGTCCCTTCACAAGAGACTGATGGTGAAGACAATCCATAA
AA sequence Show only first row Show all	>Lus10022741 pacid=23178647 polypeptide=Lus10022741 locus=Lus10022741.g ID=Lus10022741.BGIv1.0 annot-version=v1.0 MASSKHCMNALCGASTSSVWIKGWGLRSGEFANLCDKCGLAFEQSIFCEVFHPKDPGWRECTSCGKRLHCGCVASILLVELLDDGGVKCLNCYRKSGANT VGDDKKPNGFVKSRINDIAEMQSLSAENGRMGARSLLQSHGDDINASFRQMKQQLIFPKMGETGSTSFSHFDQASNILSPPVKDIGAKDLYESLAHTNFS MGLGPLGNSSPFGMVVDERSQSKTPLVPGSSSRHLLFKPPNIATGMEPNHTIRIARPPAEGRGRSQLLPRYWPRITDQELQQISMDPNSTIYPLFEKVLS ASDAGRIGRLVLPKACAEAYFPPISQPEGIPLRIQDIKGKNWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRIDPERKLIMGFRKAPNPAT TQGSSDAHLSAMSKHFQSASGDTSSWFKSEKEDMSREGSMQPSTLVPEKKRARNIGTKSKRLSMANQDASELKLTWEEAQDLLRPAPTSKPNIVTIDDHE FEEYDEPPVFGKTSIFVVHSTGTQEQWAECDNCSKWRKLPVDFLLPPKWTCSENTWDQSRNSCSVPDELSPKELDNLLRQNKDHNKRRLTSKQGGAQEPE SSGLEALANVAIHGDVGPTTTKHPRHRAGCSCIVCIQPPSGKGKHKPNCTCNVCKTVKRRFETLLKRKKKRLSDREAELAAQMNQQQQQEGETSSRSNRS RSTEKPLVENGKGRIDLNYCPDREEDSSEVIVKNQIMTMLDLLQAATNHLPLENYRNCPTNFASEQETGSTYRVPSQETDGEDNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10022741 [exp]	0	1
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Lus10036905 [exp]	5.2	0.7489
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10009273 [exp]	6.9	0.7975
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10022150 [exp]	9.8	0.7598
AT5G61120			unknown protein		Lus10030998 [exp]	29.5	0.7073
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10042646 [exp]	32.9	0.7330
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10043153 [exp]	36.5	0.7257
AT2G33490			hydroxyproline-rich glycoprote...		Lus10002580 [exp]	38.4	0.6129
					Lus10024691 [exp]	39.3	0.6908
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10031505 [exp]	39.4	0.6922
AT4G38380			MATE efflux family protein (.1...		Lus10014441 [exp]	52.7	0.6778

Compare expression of checked genes

Lus10022741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.