Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08760 572 / 0 ATSIK Protein kinase superfamily protein (.1) AT3G55450 214 / 7e-64 PBL1 PBS1-like 1 (.1.2) AT5G15080 216 / 2e-63 Protein kinase superfamily protein (.1) AT3G09830 214 / 2e-63 Protein kinase superfamily protein (.1.2) AT3G28690 211 / 4e-63 Protein kinase superfamily protein (.1.2.3) AT2G28940 210 / 1e-61 Protein kinase superfamily protein (.1.2) AT2G39110 207 / 5e-61 Protein kinase superfamily protein (.1) AT3G01300 208 / 1e-60 Protein kinase superfamily protein (.1) AT1G69790 205 / 1e-60 Protein kinase superfamily protein (.1) AT5G47070 205 / 2e-60 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014168 [exp] 987 / 0 AT3G08760 573 / 0.0 Protein kinase superfamily protein (.1) Lus10040804 [exp] 211 / 5e-62 AT2G28940 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 208 / 6e-62 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10038087 [exp] 210 / 8e-62 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10030668 [exp] 211 / 1e-61 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 210 / 3e-61 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10006643 [exp] 206 / 2e-60 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10024391 [exp] 203 / 1e-59 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10038711 [exp] 205 / 2e-59 AT3G09830 547 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136400 [exp] 719 / 0 AT3G08760 618 / 0.0 Protein kinase superfamily protein (.1) Potri.006G108200 [exp] 696 / 0 AT3G08760 573 / 0.0 Protein kinase superfamily protein (.1) Potri.006G126000 [exp] 222 / 3e-66 AT3G09830 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G129000 [exp] 217 / 4e-64 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 216 / 1e-63 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.001G240500 [exp] 214 / 2e-63 AT2G28940 563 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G031500 [exp] 214 / 3e-63 AT2G28940 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G033800 [exp] 213 / 2e-62 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 212 / 3e-62 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 211 / 6e-62 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10022742 pacid=23178543 polypeptide=Lus10022742 locus=Lus10022742.g ID=Lus10022742.BGIv1.0 annot-version=v1.0 ATGGGGTGCTTCACAGTTTTGAGGAGCAAGAAGAAAAGGGCTGAATATTCAGCTTCCACAAAACCAGTTATATCCAAGGACCAAATCACACCAGTCACAC TTCCTGAGCCCAAGCTATTGACCCGTTCTTTGCAGTCTGCACCTTCTAGCTTCAAGACTAGAGTCAAGCCTGTTCAATCTGAGAACAACAGAACGGCCAA CAGTAGAGCTCGAGCGTTGTCTGCTCCGGAAAGTCTCGATGCGGAGGATGCACTTGTATCAGCGGAGTACGCTGACCACGATGAATCAAAGGGACGAGGA AGTGGGTTCGCGAAGGAACATCATCGATCCCCAAGTCCGCAACCTCTTCCTCTACCTTCGGTGCATTACTCTGGTTCGCTAAAGCCCCTGAATAGCTTTA AATCGGTAAATGGCAGTGGCCCCCTCTGTGCTTCCGGACCGTTGCCACTGCCTCCTACTGGAACACACAGTGGAGGATTGCGTAGCTTTTCTTACGATGA AGTTGCATCTGCTTGCTGTAATTTCTCCTCCGATCAGTGTGTATCAGAAGGCCTTTCTTCGATCATATATAGGGCTTCTTTTGTTAACGATGCTTCAAGT TCGAAACTTTTTGAAGCCACTGTCACTCGTCTTCAGTCCTCCGCACAGGGTCTAAAGGAATTTATAAGCGAGGTGAACACACTTGCATCTTTGAGGCATC CAAACCTGTGTAAATTGCTCGGTTACCACGCACGCGAAGGATCAGAACAGAGAATGCTGGTCTACGAGAGGCTACATCACGGAAGTTTGGACCGAATCTT GTATGGAAGATCGGACGGTCCTCCTCTTGATTGGAATGCTCGGATGAAAATTGCTCTCTCTGCTGCACAGGGTCTCACTTTCCTCCATGAAGAAGGCCCA TTCCAGGCAATGTACAATGAATTCTCCGCTGCCAACATACAGATTGATAAAGATTTCAGCGCGAAGCTCTCTGGATATGGTTGTGTTTGTCAGCTACCCG ATACCGAGATCCCAAGTAGCTCTGTGGCAGTGGGGAATCTCTCAGTTGAAACACTGGAGAAAGGTCTTTTGACTCCAAAGAGCAACGTGTGGAGCTTCGG TATCGTCCTTCTCGAACTACTCACTGGGCGGAAAAATCTAGACAGTAGGCACACCAGGGAAGAACGGAACTTGGTTAAGTGGAGCCGTCCTTTCCTCTCC GACGACTGCAGGCTATCCATGATTATGGATCCTCAGCTCAAGCAACGATTCCCCGTAAAAGCAGCCAGAACAGTAGCCGGGATTGCCCTGAGATGCCTTC AGAAAGAGCCACTGGACAGACCAACCATGAGAATCGTCGTCGAACACCTGAAGGCCATCCAGGACTTGAAACACTCCTCTCGTTTCCCTCTTCAAGAGCC CGCTGCAGTTGCCAGAAAGCCGATGGCTCGATTCGCCAGTTTTAACGGGATCGTCGCCCCTGCACCACGGTCGAGTTTCTCGCCATCGCCGCCTCCGGGA GCAGGTCCTCTACTCGGTTACTCTCCTCCTAGGGTCTCTGTGTTTTCCGGATCCCTTCCTCCGCGAGCATGCTCGAGTTCTACGATCTCATTGGACGAGC TGGAACGAGAGGAGAGCAGGAGATCGTCGAGTTCGACTGTTCGGAGAACTAGCGTAGAGGGGTTCTGA
AA sequence Show only first row Show all	>Lus10022742 pacid=23178543 polypeptide=Lus10022742 locus=Lus10022742.g ID=Lus10022742.BGIv1.0 annot-version=v1.0 MGCFTVLRSKKKRAEYSASTKPVISKDQITPVTLPEPKLLTRSLQSAPSSFKTRVKPVQSENNRTANSRARALSAPESLDAEDALVSAEYADHDESKGRG SGFAKEHHRSPSPQPLPLPSVHYSGSLKPLNSFKSVNGSGPLCASGPLPLPPTGTHSGGLRSFSYDEVASACCNFSSDQCVSEGLSSIIYRASFVNDASS SKLFEATVTRLQSSAQGLKEFISEVNTLASLRHPNLCKLLGYHAREGSEQRMLVYERLHHGSLDRILYGRSDGPPLDWNARMKIALSAAQGLTFLHEEGP FQAMYNEFSAANIQIDKDFSAKLSGYGCVCQLPDTEIPSSSVAVGNLSVETLEKGLLTPKSNVWSFGIVLLELLTGRKNLDSRHTREERNLVKWSRPFLS DDCRLSMIMDPQLKQRFPVKAARTVAGIALRCLQKEPLDRPTMRIVVEHLKAIQDLKHSSRFPLQEPAAVARKPMARFASFNGIVAPAPRSSFSPSPPPG AGPLLGYSPPRVSVFSGSLPPRACSSSTISLDELEREESRRSSSSTVRRTSVEGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08760		ATSIK	Protein kinase superfamily pro...		Lus10022742 [exp]	0	1
AT5G03230			Protein of unknown function, D...		Lus10026507 [exp]	5.1	0.8178
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10041600 [exp]	5.7	0.7862
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10011820 [exp]	12.0	0.7652
AT2G19130			S-locus lectin protein kinase ...		Lus10032944 [exp]	15.1	0.7200
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10028232 [exp]	16.4	0.6954
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10004368 [exp]	17.3	0.7561
AT3G29770		ATMES11	ARABIDOPSIS THALIANA METHYL ES...		Lus10013193 [exp]	20.1	0.6843
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10012031 [exp]	22.6	0.7162
AT5G42140			Regulator of chromosome conden...		Lus10029772 [exp]	29.8	0.6201
AT2G33580			Protein kinase superfamily pro...		Lus10042226 [exp]	32.4	0.7037

Compare expression of checked genes

Lus10022742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.