Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01880 122 / 1e-35 RING/U-box superfamily protein (.1) AT3G10910 110 / 1e-30 RING/U-box superfamily protein (.1) AT1G49230 98 / 2e-25 RING/U-box superfamily protein (.1) AT5G05280 96 / 7e-25 RING/U-box superfamily protein (.1) AT1G49220 85 / 3e-20 RING/U-box superfamily protein (.1) AT5G47610 83 / 3e-20 RING/U-box superfamily protein (.1) AT1G49210 83 / 8e-20 RING/U-box superfamily protein (.1) AT2G17450 82 / 9e-20 RHA3A RING-H2 finger A3A (.1) AT4G35480 81 / 5e-19 RHA3B RING-H2 finger A3B (.1) AT3G18773 81 / 9e-19 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025146 [exp] 118 / 8e-34 AT3G10910 128 / 8e-38 RING/U-box superfamily protein (.1) Lus10029037 [exp] 117 / 1e-33 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1) Lus10006785 [exp] 100 / 3e-26 AT1G49230 197 / 7e-64 RING/U-box superfamily protein (.1) Lus10005817 [exp] 100 / 6e-26 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1) Lus10006787 [exp] 98 / 2e-25 AT1G49230 159 / 9e-49 RING/U-box superfamily protein (.1) Lus10033515 [exp] 98 / 5e-25 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10005816 [exp] 97 / 6e-25 AT1G49230 169 / 5e-53 RING/U-box superfamily protein (.1) Lus10006788 [exp] 97 / 9e-25 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10005814 [exp] 96 / 9e-25 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136200 [exp] 137 / 3e-41 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 112 / 2e-31 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 107 / 2e-29 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 102 / 2e-27 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 102 / 4e-27 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.001G309600 [exp] 102 / 5e-27 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 96 / 4e-25 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 91 / 1e-22 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.003G075200 [exp] 87 / 1e-21 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1) Potri.005G099000 [exp] 86 / 5e-21 AT1G20823 146 / 2e-44 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10022743 pacid=23178643 polypeptide=Lus10022743 locus=Lus10022743.g ID=Lus10022743.BGIv1.0 annot-version=v1.0 ATGACGCGGATCCTGCTCCACTCCTCGGCATTCAGTTCGCCGCCACCGCCGTCGAATGCGGCGGCTAATTCAACCAACGCAACAACACCAACCTCCCACG ATCCGTACATCAACGAGAGGGATTTCGACGCCAACATGGTGATTATACTCGCCGCCTTGCTCTGCGCGCTGATCGGCGCTCTGGGTCTGAACTCAATCGT CCGCTGCGCGATGAGGTGCGGCACATCCCCGCCGGCGATGGGGGCGGGGCAGGCTTCGGCGGCGTCGAAGAAGGGTTTGAAAAAGCGGGATCTGAAGCAG ATCCCTGTCGCTGTGTATGGTTCCGGGGAGGAAGGAATGCCACCGGTGACGGAGTGCTCAATCTGTCTAGGTGAGTTCACAGACGGGGAGAAAGTTCGGG TCTTGCCCAAGTGTAATCATGGGTTCCATGTGGAGTGCGTCGATAAATGGCTGCAGTCTCGCTCTTCCTGCCCTAATTGCCGGATGGATCCCAGAGATCG GCGAGGTTCCGGCGCCGGCGGTGGTTGTAATAATGTCGATGTAGTTGTTGAATCGACGTGA
AA sequence Show only first row Show all	>Lus10022743 pacid=23178643 polypeptide=Lus10022743 locus=Lus10022743.g ID=Lus10022743.BGIv1.0 annot-version=v1.0 MTRILLHSSAFSSPPPPSNAAANSTNATTPTSHDPYINERDFDANMVIILAALLCALIGALGLNSIVRCAMRCGTSPPAMGAGQASAASKKGLKKRDLKQ IPVAVYGSGEEGMPPVTECSICLGEFTDGEKVRVLPKCNHGFHVECVDKWLQSRSSCPNCRMDPRDRRGSGAGGGCNNVDVVVEST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10910			RING/U-box superfamily protein...		Lus10022743 [exp]	0	1
AT1G30700			FAD-binding Berberine family p...		Lus10038439 [exp]	2.2	0.8327
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Lus10005433 [exp]	3.5	0.8499
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10035482 [exp]	4.4	0.8585
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Lus10040448 [exp]	5.5	0.8401
AT4G33625			unknown protein		Lus10007070 [exp]	6.0	0.8371
AT5G20500			Glutaredoxin family protein (....		Lus10021590 [exp]	7.7	0.8069
AT3G59680			unknown protein		Lus10025594 [exp]	8.1	0.8164
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Lus10005888 [exp]	11.4	0.8186
AT4G29310			Protein of unknown function (D...		Lus10012933 [exp]	12.0	0.8091
AT2G34560			P-loop containing nucleoside t...		Lus10038499 [exp]	16.7	0.8193

Compare expression of checked genes

Lus10022743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.