Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51620 646 / 0 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G56320 401 / 3e-131 PAP/OAS1 substrate-binding domain superfamily (.1) AT3G61690 412 / 2e-128 nucleotidyltransferases (.1) AT2G40520 344 / 2e-110 Nucleotidyltransferase family protein (.1.2.3.4) AT2G39740 64 / 2e-10 HESO1 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1) AT5G53770 43 / 0.0007 Nucleotidyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014166 [exp] 1158 / 0 AT3G51620 539 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006095 [exp] 850 / 0 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10025239 [exp] 849 / 0 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10030266 [exp] 425 / 4e-141 AT3G61690 640 / 0.0 nucleotidyltransferases (.1) Lus10004018 [exp] 429 / 1e-134 AT3G61690 1098 / 0.0 nucleotidyltransferases (.1) Lus10042221 [exp] 411 / 5e-134 AT3G51620 424 / 8e-138 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10030265 [exp] 424 / 2e-129 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10004019 [exp] 398 / 2e-126 AT3G61690 543 / 9e-176 nucleotidyltransferases (.1) Lus10034219 [exp] 371 / 3e-119 AT3G56320 458 / 1e-154 PAP/OAS1 substrate-binding domain superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154900 [exp] 523 / 2e-175 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.019G128800 [exp] 511 / 2e-171 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.015G020400 [exp] 440 / 2e-138 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.012G000900 [exp] 434 / 4e-136 AT3G61690 907 / 0.0 nucleotidyltransferases (.1) Potri.019G056800 [exp] 414 / 4e-135 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1) Potri.002G169732 [exp] 427 / 1e-133 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.014G097600 [exp] 418 / 3e-130 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1) Potri.011G116501 [exp] 77 / 2e-16 AT3G61690 82 / 6e-19 nucleotidyltransferases (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022746 pacid=23178540 polypeptide=Lus10022746 locus=Lus10022746.g ID=Lus10022746.BGIv1.0 annot-version=v1.0 ATGGGAGATCTTCGACCGTGGTCACCGGAACTTAATGGCGACGTTGTCGAGGAAAGGCCGTCGTCCTCGTCTTCTTTTTCTTCGTTTTCATCGCCGCCGC TGACGATTGATGCGGCGAACTGGAAGATTGCTGAGGCGGCGACGCAGCTTATCATAGCGAAAGTTCAGCCTACTAATGTCTCGGAGGAGAGGAGAAAAGC TGTTGTTGATTACGTCCAGCGTCTGATTAGAAATTCCATTGGCTGCGAGGTGCTCCCTTTTGGGTCAGTGCCATTGAAAACTTATCTTCCTGATGGGGAT ATCGATTTGACGGCCTTTGGTGGTCTGAATATGGAGGAATCACTTGCCAACGATGTGCGATCGATCCTCGAGTTAGAAGATCATAACAAGGCTGCAGAGT TTGTTGTAAAAGATGTGCAATTGATTAGGGCGGAGGTTAAGCTCGTAAAATGCCTGGTGCAGAACATTGTTGTTGATATTTCCTTTAACCAATTAGGAGG TCTCTGTACTCTATGCTTTCTTGAGGAGGTAGACCGCCTGATTGGAAAGGATCATCTTTTCAAACGAAGCATTATACTGATCAAGGCATGGTGCTATTAC GAAAGCCGCATTCTTGGAGCACACCATGGCCTAATATCTACATATGCTTTGGAAACATTGGTTCTTTATATATACCATATCTTCCACTCGTCACTAGATG GTCCATTGGCTGTGAGTCTTGTGATAGCTTATATGGACTATTTTAGCAAATTTGACTGGGAAAACTACTGCATTAGTTTGAATGGCCCAGTCCGAATATC CTCATTGCCAGAAGTTGTAGTTGATGTCGCTGACCATGGTGGATGTGATCTACTGCTGAGTCATGAGTTTATCAAAAAGTGCGTGGACAGGTTTTCTGTT CCTTTTAGAGGATCTGAGACAAACTCACGTATGTTTCCAACGAAGCATCTCAACATTGTTGATCCCTTGAAAGAAAACAATAACCTTGGTCGGAGTGTGA GCAAAGGGAACTTTTACCGGATAAAAAGTGCTTTCAGCTATGGAGCTCGAAAGCTCGGTCTGATTCTTTCGCAGCAAGAAGAAAATGTAGCTGATGAACT CTGCGGGTTTTTTTCCAACACTCTGGATAGACATGGCAATGGTCAAAGACCTGATGTTCAAGATCCATTACCCATGGATGGACACCATGGACACAGTACC AGGTCAGCATCTTCAGGTAAAGAAACTGGCCAAGACCACCAGAGAAATTCTGAAGCAAGTGGCAAAAATGGCATCAGTGTTAAGTTATCAGATATGGGAG CGAAATGCAGCAAAGACACCACTGAAGCAGGCAAAATGGAAAATGGTAGTTTGTTTTCTCACCACCGTCTTTCCGGTGATGCAGAAGATCTGGCATCTGC TAGAATTCAACACCTTTCCATTTCCGGCGATGGACTGATACATTCTAGTACAAAAACTGAGAGCCCCACGAAAGAAGTGCAACTACGTCATGCACCAGAT CTCAATTTCACTGGTGACCATGTTGTGTTGTCCCCTGTTGGATCATCAGTTGGATTTCCTTCTGAAAATCATCAACCTGGTCATTGTAGTGCTGGAAACT TCGATGCCCTAGACTCTCTTTCAGATCTCAGAGGTGATTATGAAGCTCACCTCCTTAGTTTGAGCCATGGCCGGTGGTGCTACGAATACGTACCAACTTC TCCAGTTCCGCCTATATCTCCAGTAATGTTCAGTCCGGTCCAGAAAAAAAATTATTGGGACGGAACGAGACGACCGGCTCATTACAGGCAGAATCTCAAT GGAGTAAGTCCGAGGCCTGTGCTTAATTCGATCAATCCACCCTTTCTGCACGGTCCAATGTTTGCTATGGAAGAGGTATCGAAGCAACGAGGAACCGGGA CATACTTCCCAAAAGTGAACCATTACAGGGACAAGTCTTTGACGCCGAGGGGAAGTAGTCAGGTGTCACTACGGTCTCCTCGTACCAATGGCTGTATCGC TACTTCTCAGGAGCCTAACTTTTCAGAAAGAAGCAGAGGGCAGCTATGTCCAGGTTCTGCTGTTGGACCGGATACACTGCAGTCAAAACCTCCAGCCGTT GAAAGCCTCACATCAGCGGAATCCAATTCAAAGCCAGAGGTTGGACGGGATCTGATGGGCGCTAGTTGA
AA sequence Show only first row Show all	>Lus10022746 pacid=23178540 polypeptide=Lus10022746 locus=Lus10022746.g ID=Lus10022746.BGIv1.0 annot-version=v1.0 MGDLRPWSPELNGDVVEERPSSSSSFSSFSSPPLTIDAANWKIAEAATQLIIAKVQPTNVSEERRKAVVDYVQRLIRNSIGCEVLPFGSVPLKTYLPDGD IDLTAFGGLNMEESLANDVRSILELEDHNKAAEFVVKDVQLIRAEVKLVKCLVQNIVVDISFNQLGGLCTLCFLEEVDRLIGKDHLFKRSIILIKAWCYY ESRILGAHHGLISTYALETLVLYIYHIFHSSLDGPLAVSLVIAYMDYFSKFDWENYCISLNGPVRISSLPEVVVDVADHGGCDLLLSHEFIKKCVDRFSV PFRGSETNSRMFPTKHLNIVDPLKENNNLGRSVSKGNFYRIKSAFSYGARKLGLILSQQEENVADELCGFFSNTLDRHGNGQRPDVQDPLPMDGHHGHST RSASSGKETGQDHQRNSEASGKNGISVKLSDMGAKCSKDTTEAGKMENGSLFSHHRLSGDAEDLASARIQHLSISGDGLIHSSTKTESPTKEVQLRHAPD LNFTGDHVVLSPVGSSVGFPSENHQPGHCSAGNFDALDSLSDLRGDYEAHLLSLSHGRWCYEYVPTSPVPPISPVMFSPVQKKNYWDGTRRPAHYRQNLN GVSPRPVLNSINPPFLHGPMFAMEEVSKQRGTGTYFPKVNHYRDKSLTPRGSSQVSLRSPRTNGCIATSQEPNFSERSRGQLCPGSAVGPDTLQSKPPAV ESLTSAESNSKPEVGRDLMGAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10022746 [exp]	0	1
AT3G25510			disease resistance protein (TI...		Lus10009005 [exp]	1.0	0.7728
AT1G77310			unknown protein		Lus10028666 [exp]	16.1	0.5984
AT1G77320		MEI1	meiosis defective 1, transcrip...		Lus10028668 [exp]	61.0	0.5306
AT2G20410			RNA-binding ASCH domain protei...		Lus10028672 [exp]	82.4	0.5427
AT4G16100			Protein of unknown function (D...		Lus10037716 [exp]	163.6	0.5508
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10014868 [exp]	164.2	0.5788
AT3G28410			F-box/RNI-like superfamily pro...		Lus10029357 [exp]	168.1	0.5677

Compare expression of checked genes

Lus10022746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.