Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51630 586 / 0 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G58350 506 / 2e-173 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT3G48260 440 / 1e-148 WNK3 with no lysine (K) kinase 3 (.1) AT3G22420 437 / 7e-147 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT3G18750 420 / 3e-140 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT1G49160 406 / 9e-135 WNK7 Protein kinase superfamily protein (.1.2) AT5G28080 400 / 3e-133 WNK9 Protein kinase superfamily protein (.1.2) AT3G04910 405 / 2e-132 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT5G41990 375 / 2e-122 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT1G64630 355 / 2e-115 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014165 [exp] 987 / 0 AT3G51630 609 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Lus10008590 [exp] 550 / 0 AT5G58350 624 / 0.0 with no lysine (K) kinase 4 (.1) Lus10042223 [exp] 533 / 0 AT5G58350 630 / 0.0 with no lysine (K) kinase 4 (.1) Lus10024192 [exp] 512 / 5e-177 AT5G58350 540 / 0.0 with no lysine (K) kinase 4 (.1) Lus10009921 [exp] 511 / 8e-177 AT5G58350 545 / 0.0 with no lysine (K) kinase 4 (.1) Lus10010547 [exp] 460 / 2e-154 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10004904 [exp] 460 / 5e-154 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) Lus10041947 [exp] 429 / 3e-143 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10017957 [exp] 430 / 1e-138 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G134600 [exp] 656 / 0 AT3G51630 591 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Potri.013G155100 [exp] 583 / 0 AT5G58350 689 / 0.0 with no lysine (K) kinase 4 (.1) Potri.019G128600 [exp] 556 / 0 AT5G58350 662 / 0.0 with no lysine (K) kinase 4 (.1) Potri.005G049800 [exp] 440 / 7e-146 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.015G084600 [exp] 430 / 1e-143 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.012G086700 [exp] 428 / 8e-143 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.010G087900 [exp] 411 / 3e-134 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.003G145300 [exp] 403 / 5e-133 AT5G41990 609 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.013G036300 [exp] 403 / 3e-131 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.001G085500 [exp] 397 / 1e-130 AT5G41990 606 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022747 pacid=23178627 polypeptide=Lus10022747 locus=Lus10022747.g ID=Lus10022747.BGIv1.0 annot-version=v1.0 ATGCACAATTCTAAGCTGCTGATGATGCAACACCATGGATACGCTGAGACTGACCCTTCTGGTAGATACGGCCGTTTCAAGGAGGTTCTTGGGAAAGGTG CGATGAAGACCGTGTACAAGGCATTTGACGAGGTACTTGGAATGGAGGTAGCCTGGAATCAAGTGAAGCTCAACAATGTATTTCGCTCGCCTGATCATTT GCAGAGGCTCTACTCAGAAGTTCATCTCCTGAAGAATCTCAAGCACGAATCCATCATCAAGTTCCATGCTTCGTGGATCGACAGTACTCGAAGGACGTTC AACTTCATCACTGAGATGTTCACCTCCGGCACCCTACGAGAGTACAGAAAGAAGTACCAGAGAGTAGATATCCGAGCAGTGAAGAACTGGTCGAGGCAAA TCCTGCACGGACTTGTTTATCTGCACGGCCATGACCCGCCTGTGATCCATAGGGATCTCAAAGGTGATAACATCTTCATCAACGGCCATCTGGGACAGGT CAAGATTGGCGACTTGGGATTAGCAGCGATTCTTCGAGACTCGCAACACGCGCATAGTGTCATAGGTACTCCCGAGTTCATGGCACCGGAACTATACGAA GAAGAGTACAACGAGCTCGTAGATGTATACTCATTCGGGATGTGTGTTCTGGAGATGCTAACTTCTGAGTATCCCTACAGTGAATGCTCGAATCCCGCTC AAATCTACAAGAAAGTGACCTCTGGGAAGCTGCCCGAGGCGTTCCACAAGATCAAGGATGCTGAAGCGAAGAAGTTTGTCGGGAAATGTCTCGAGCCTGC TTCGAAGAGATTATCAGCTAAAGAGCTACTCTTGGAACCGTTTGTAGCACTTGGTGATGAACCAGAATTGCTACCAGTCTCAAAGTTTTCGTCTTTTCGA AGCTCCCCGGCTTCTAGCTGTGAAAGTGAGGAGATGATGATGACGACAATGACGATGATGATGCTGTCTTTGCAGGATGATCATCCTGAAACTACGGATA TGACGATTACAGGAACTCTGAACCCTGAACACGACGCTGTTTTCCTCAAAGTCCAGATTTCTGACTGCAGTGGCATGAAACACGTTCCATGCTCTCGGCA TACCAAGAACATACATTTCCCCTTTGACATAACTGGAGACACAGCGATCGATGTTGCGATGGAAATGGTGAAAGAGCTGGAGATCAGTGACTTGGAACCA ATCACCATCGCCAAGATGATAGAAGACGAGATATCTTCTTTAGCTCCGACATGGAAACAACAAGGAACCTTCATTTTCCACCAGCAGCAGCATAGCTTTA GCTACGTGGATGATGCAGAAGAGGAAGAAGAAGAAGAAGAAATCGGCAACCACAAAAATTCGGAAGGAATCTATCATCCATTCTACTCGACCTCCCCTTC CTCGGACGCTTCCTCCTCCAACAGAGCTTCTCTGTTGGCCTTCAACAGCTCCTCCTCTGAGAGTCCACGTTATGAGGATTGCACTACACCAATTGTCACT TTAGGTACACATGGTCCAACTGTTCAGTCAGATGCTGACAGCACTAATTATGGATCGAAAATGGGTAAAAAAAATGCAGGGAAGCTGCTACAAGATGATG CAGATGACTTGAGTTCGGAGAGCTCTTACAACTACTCAACAGTCTCTTACTGCTCCGGAAACGAAGACGAGCATAATCGGCCAGAAGAAGAACAATCTAT AGCTAAGATTGACCAGTCGGAAAGCTGCAAAGGAGGAGGGTGTAGGATGATGCCACCGGGGAGGAAGAAGAAGCTGAGCCGAATACGATCGGTGTTGGAT ATGAGAAGCCAGTTGCTGAACCGGTCGTGGGTGCAAGAGATGAACAAGAAGCGTTTGTTCAAGACTGTGGGAGCAGTTGAGAACATTGGATATCATGACT GGAACCCTTCTGCTTCTTCCTGA
AA sequence Show only first row Show all	>Lus10022747 pacid=23178627 polypeptide=Lus10022747 locus=Lus10022747.g ID=Lus10022747.BGIv1.0 annot-version=v1.0 MHNSKLLMMQHHGYAETDPSGRYGRFKEVLGKGAMKTVYKAFDEVLGMEVAWNQVKLNNVFRSPDHLQRLYSEVHLLKNLKHESIIKFHASWIDSTRRTF NFITEMFTSGTLREYRKKYQRVDIRAVKNWSRQILHGLVYLHGHDPPVIHRDLKGDNIFINGHLGQVKIGDLGLAAILRDSQHAHSVIGTPEFMAPELYE EEYNELVDVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPEAFHKIKDAEAKKFVGKCLEPASKRLSAKELLLEPFVALGDEPELLPVSKFSSFR SSPASSCESEEMMMTTMTMMMLSLQDDHPETTDMTITGTLNPEHDAVFLKVQISDCSGMKHVPCSRHTKNIHFPFDITGDTAIDVAMEMVKELEISDLEP ITIAKMIEDEISSLAPTWKQQGTFIFHQQQHSFSYVDDAEEEEEEEEIGNHKNSEGIYHPFYSTSPSSDASSSNRASLLAFNSSSSESPRYEDCTTPIVT LGTHGPTVQSDADSTNYGSKMGKKNAGKLLQDDADDLSSESSYNYSTVSYCSGNEDEHNRPEEEQSIAKIDQSESCKGGGCRMMPPGRKKKLSRIRSVLD MRSQLLNRSWVQEMNKKRLFKTVGAVENIGYHDWNPSASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10022747 [exp]	0	1
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10032097 [exp]	7.5	0.8664
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10033732 [exp]	8.8	0.8671
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10003129 [exp]	9.6	0.8719
AT5G65660			hydroxyproline-rich glycoprote...		Lus10042928 [exp]	10.9	0.8073
AT4G19640		ATRAB-F2B, ARA7...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10036198 [exp]	13.7	0.8508
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10036196 [exp]	14.7	0.8643
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10003215 [exp]	15.5	0.8707
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10030496 [exp]	16.0	0.8366
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10005258 [exp]	17.9	0.8240
AT1G53580		GLY3, GLX2-3, E...	GLYOXALASE 2-3, ETHE1-LIKE, gl...		Lus10007336 [exp]	24.3	0.7680

Compare expression of checked genes

Lus10022747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.