Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01820 459 / 2e-160 PKS24, CIPK14, ATSR1, SnRK3.15, ATCIPK14 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) AT2G30360 456 / 2e-159 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT4G18700 407 / 4e-139 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G45810 402 / 4e-137 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT1G29230 394 / 1e-133 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT2G38490 390 / 7e-133 CIPK22, SnRK3.19 SNF1-RELATED PROTEIN KINASE 3.19, CBL-interacting protein kinase 22 (.1) AT2G34180 385 / 1e-130 ATWL2, CIPK13, SnRK3.7 SNF1-RELATED PROTEIN KINASE 3.7, WPL4-LIKE 2, CBL-interacting protein kinase 13 (.1) AT5G45820 382 / 4e-130 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT4G30960 382 / 5e-130 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G58380 365 / 4e-123 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025245 [exp] 591 / 0 AT5G01820 504 / 1e-177 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Lus10009103 [exp] 575 / 0 AT2G30360 501 / 1e-176 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10009925 [exp] 476 / 3e-166 AT2G30360 553 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10015275 [exp] 399 / 2e-135 AT4G18700 736 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10021852 [exp] 383 / 2e-130 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10022749 [exp] 381 / 2e-129 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10036280 [exp] 380 / 2e-129 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10029232 [exp] 369 / 3e-127 AT4G18700 466 / 3e-165 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10014163 [exp] 372 / 7e-126 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G133900 [exp] 514 / 0 AT5G01820 490 / 2e-172 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Potri.013G155600 [exp] 479 / 2e-168 AT2G30360 536 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Potri.019G128100 [exp] 476 / 2e-167 AT2G30360 531 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Potri.011G067600 [exp] 405 / 2e-137 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.004G058300 [exp] 395 / 7e-134 AT4G18700 735 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.018G108500 [exp] 384 / 8e-131 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.006G186200 [exp] 383 / 2e-130 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.013G156000 [exp] 377 / 8e-128 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.016G133500 [exp] 375 / 5e-127 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 373 / 2e-126 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022748 pacid=23178533 polypeptide=Lus10022748 locus=Lus10022748.g ID=Lus10022748.BGIv1.0 annot-version=v1.0 ATGAGTTATGACTCCATTATGCCAGACGACTCACCCGCCGCCGGTCCCCTGTTCGGAAAATACGAGGTGGGTAAGCTCCTGGGCTGCGGCGCATTCGCCA AAGTGTACCACGCGCGAAACGTTGATACAGGGCAGAGCGTGGCGATCAAAATCGTCAGCAAGCGCAAAATCCAGAAAGCAGGGATGACTGCGGCGAATGT CAAGAGGGAGATCTCTATCATGCGCCGGCTGCGCCACCCCAATATCGTGCGCCTGTTCGAAGTCCTCGCTACCAAGACCAAAATCTACTTCGTGATGGAG TACGCCAAAGGAGGCGAGCTCTTTGTCAAAATTTCCAAAGGACGGTTCTCGGAAGATCTCAGCCGTAAATACTTCCAGCAGCTGATCACGGCCGTCGGCT ACTGTCACGCGAGAGGCGTGTTCCATCGGGATTTGAAGCCGGAGAATTTGTTGCTCGACGACCGAATGAACCTCAAAGTCTCCGACTTCGGCCTCAGCGC CACCACCACCGTTGGATTGTCATCAACAGACGGTGGGGAGCTGTTGCATACTTTGTGTGGGACCCCTGCGTACGTGGCGCCCGAAATTCTCGGGAAGAAG GGGTACAACGGTGCCAAGGTGGACGTCTGGTCATGCGGAGTCGTCCTGTTCGTCCTCGTCGCTGGTTACCTTCCGTTCAACGACGCAAACCTCATGGCGA TGTACAAGAAGATCTACAGAGGAGAATTCCGCTGCCCGAAGTGGACGTCACCGGAGCTGCGACGACTGCTCTTCCGTCTCCTGGATTCAAATCCAGAGAC GAGGATCACGATCGACGAGATCCTCGGCGACGATTGGTTCAAGAAGGGTGGTTACAAGGAGGTGAAGAATTCCCCCGCGGCGGGGGATTTCGATTTCAAG AGCAGGATGATAGAAGAGCAGAGTCTTAACGCGTTCGATTTGATATCTTTCTCATCGGGATTCGATCTCTCCGGCCTCTTCGACAAGTCAGGGATCGAGC GGTTCGTATCGACGGAGTCGCCGGGGCGGATCGTACAGGGAGTGGAAGAGGCAGCTAAAGTGGAGAATTTGACGGTGACGGAGAATAAGAAATCAGGGAT GAAACTGGAAGGGCGGGACGGTAATTTCGTGATGCTGCTGGAAATTTACCGTTTGAGTGATGAGCTGGTGGTTTTCGAAGTGAGGGAGAAAGAAGTAAAT GTACTACCCGGCTGTGAAATATGGAAGTATAAGCTCCGGCCGCATCTCCGCCGATTAGCCGGAACCGCTGACGACGCCGTTTGA
AA sequence Show only first row Show all	>Lus10022748 pacid=23178533 polypeptide=Lus10022748 locus=Lus10022748.g ID=Lus10022748.BGIv1.0 annot-version=v1.0 MSYDSIMPDDSPAAGPLFGKYEVGKLLGCGAFAKVYHARNVDTGQSVAIKIVSKRKIQKAGMTAANVKREISIMRRLRHPNIVRLFEVLATKTKIYFVME YAKGGELFVKISKGRFSEDLSRKYFQQLITAVGYCHARGVFHRDLKPENLLLDDRMNLKVSDFGLSATTTVGLSSTDGGELLHTLCGTPAYVAPEILGKK GYNGAKVDVWSCGVVLFVLVAGYLPFNDANLMAMYKKIYRGEFRCPKWTSPELRRLLFRLLDSNPETRITIDEILGDDWFKKGGYKEVKNSPAAGDFDFK SRMIEEQSLNAFDLISFSSGFDLSGLFDKSGIERFVSTESPGRIVQGVEEAAKVENLTVTENKKSGMKLEGRDGNFVMLLEIYRLSDELVVFEVREKEVN VLPGCEIWKYKLRPHLRRLAGTADDAV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10022748 [exp]	0	1
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022728 [exp]	3.0	0.8718
AT5G17850			Sodium/calcium exchanger famil...		Lus10020318 [exp]	5.7	0.8802
AT1G76180		ERD14	EARLY RESPONSE TO DEHYDRATION ...		Lus10021827 [exp]	6.8	0.8792
AT2G21860			violaxanthin de-epoxidase-rela...		Lus10032756 [exp]	8.2	0.8654
AT3G07790			DGCR14-related (.1)		Lus10006367 [exp]	9.5	0.8652
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10007126 [exp]	10.2	0.8598
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10028452 [exp]	11.0	0.8415
AT4G00880			SAUR-like auxin-responsive pro...		Lus10032949 [exp]	11.5	0.8644
AT3G55420			unknown protein		Lus10040295 [exp]	14.1	0.8384
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10017957 [exp]	14.1	0.8396

Compare expression of checked genes

Lus10022748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.