Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58380 597 / 0 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G45820 565 / 0 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G07070 560 / 0 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1) AT5G01810 556 / 0 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT5G10930 503 / 2e-177 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT5G25110 501 / 8e-176 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT4G18700 500 / 2e-175 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT4G30960 490 / 3e-172 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G45810 491 / 5e-172 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT1G30270 476 / 5e-166 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014163 [exp] 834 / 0 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10042229 [exp] 600 / 0 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 531 / 0 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10008582 [exp] 523 / 0 AT5G58380 570 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10021852 [exp] 519 / 0 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10024448 [exp] 516 / 0 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10036280 [exp] 514 / 0 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10007448 [exp] 503 / 1e-176 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10029054 [exp] 493 / 1e-173 AT5G58380 483 / 4e-169 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G133500 [exp] 676 / 0 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 599 / 0 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 597 / 0 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 594 / 0 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 574 / 0 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.006G186200 [exp] 537 / 0 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.006G263500 [exp] 523 / 0 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.018G108500 [exp] 519 / 0 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G019900 [exp] 505 / 5e-178 AT5G10930 576 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Potri.011G067600 [exp] 492 / 2e-171 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022749 pacid=23178631 polypeptide=Lus10022749 locus=Lus10022749.g ID=Lus10022749.BGIv1.0 annot-version=v1.0 ATGGAGCAGAAGGGATGCGTGTTGATGAACAAGTATGAGATTGGGAGGTTGTTAGGTCAAGGGACCTTTGCCAAGGTTCACTACGCTAGGAATCTTGAGA ATGGTACAAGTGTGGCTATCAAGATCATTGATAAGGAGAAAGTGTTGAAAGTCGGAATGATGGACCAGATCAAGCGGGAGATTTCGATAATGAGACTAAT CCGCCATCCGAACGTGGTGGAGCTTTACGAGGTTCTGGCAACCAAGACGAAGATTTACTTTGTCATGGAGTATGTCAAAGGCGGCGAGCTCTTCAACAGA GTCGCCAAGGGGAAAGTGAAACCAGACGTTGCGAGAAAGTACTTCCAACAGCTGATCAGCGCAGTCGATTACTGCCATAGCCGCGGGGTTAGCCACCGCG ATCTGAAGCCGGAGAATCTGCTTCTGGATGAACACGAGAATTTGAAGGTTACGGATTTCGGACTCAGCGCTCTTGCTGATTGCAAGAGGCAAGATGGATT GCTCCACACCACGTGTGGAACTCCTGCCTATGTCGCTCCGGAAGTTATCGTTCGAAAAGGATACGATGGATCGAAAGCCGATATTTGGTCTTGTGGAGTT ATCTTGTATGTTCTGCTTGCTGGTTATTTGCCGTTTCATGACTCGAATCTAATGGAGCTTTATAGGAAGATAATGAAGGGAGAGTTCAAGATTCCGAACT GGTTCTCGTACGAGGTTCGGAGGTTTCTGTCGAAAATCATGGATCCGAATCCGAGCAAGAGGATTACTATTGCCAGGATAATGCAGAACTCGTGGTTTCA AAAGGGCCTATTCGAGCCGAACAAGCAGACGACTGATTTGCCCGAGACAGACGAATCGAATCAAAATTCGAAGCGATGTAGTAACCTGAACGCGTTCGAT ATAATTTCGTATTCGTCTGGATTCGATTTGTCGGGGCTGTTCGAGGAGAAGGGGGAGAAGAAAGAGGTGACGTTTACTTCGAACAGGGCGGCTTCTACGA TTATCTCGAGAGTCGAGGAGGTGGCGAAGCGACTAAACCTGAGGGTGAAGAAGAAGGAAGGAGGGCTGATGAGATTGGAAGGTGCGAGGGAAGGGAGGAA AGGTGTGATTGGGATAGAAGCTGAGATTTTCGAGATAAGTCCGTGCTTCCATTTGGTGGAGATGAAGAAGTGCAGTGGGGATACGATGGAGTATCGGAAA GTGGTGAAGGAAGAGATTCGGCCTTCGTTGAAGGATATCGTGTGGAGTTGGCAAGGAGAACAGCAGCAGCAGCAGCTTCCTGTTTCGAGTGTGTTGTCAG ATATCGCGGCTCAGATAAAACCATTGAACCTGGCAGAAGCTGATGAATGA
AA sequence Show only first row Show all	>Lus10022749 pacid=23178631 polypeptide=Lus10022749 locus=Lus10022749.g ID=Lus10022749.BGIv1.0 annot-version=v1.0 MEQKGCVLMNKYEIGRLLGQGTFAKVHYARNLENGTSVAIKIIDKEKVLKVGMMDQIKREISIMRLIRHPNVVELYEVLATKTKIYFVMEYVKGGELFNR VAKGKVKPDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDEHENLKVTDFGLSALADCKRQDGLLHTTCGTPAYVAPEVIVRKGYDGSKADIWSCGV ILYVLLAGYLPFHDSNLMELYRKIMKGEFKIPNWFSYEVRRFLSKIMDPNPSKRITIARIMQNSWFQKGLFEPNKQTTDLPETDESNQNSKRCSNLNAFD IISYSSGFDLSGLFEEKGEKKEVTFTSNRAASTIISRVEEVAKRLNLRVKKKEGGLMRLEGAREGRKGVIGIEAEIFEISPCFHLVEMKKCSGDTMEYRK VVKEEIRPSLKDIVWSWQGEQQQQQLPVSSVLSDIAAQIKPLNLAEADE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10022749 [exp]	0	1
AT5G39670			Calcium-binding EF-hand family...		Lus10042369 [exp]	1.4	0.9292
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10040069 [exp]	5.1	0.9211
AT4G33920			Protein phosphatase 2C family ...		Lus10002110 [exp]	6.5	0.9100
AT5G60750			CAAX amino terminal protease f...		Lus10024708 [exp]	7.7	0.9084
AT5G47070			Protein kinase superfamily pro...		Lus10001088 [exp]	7.9	0.8846
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Lus10029761 [exp]	9.5	0.8668
AT4G27280			Calcium-binding EF-hand family...		Lus10033753 [exp]	11.5	0.9014
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10024263 [exp]	12.4	0.8980
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10014163 [exp]	12.6	0.8919
AT4G33920			Protein phosphatase 2C family ...		Lus10013896 [exp]	12.8	0.9019

Compare expression of checked genes

Lus10022749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.