Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01800 167 / 5e-51 saposin B domain-containing protein (.1) AT3G51730 156 / 8e-47 saposin B domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014162 [exp] 355 / 3e-123 AT5G01800 176 / 4e-54 saposin B domain-containing protein (.1) Lus10025248 [exp] 213 / 3e-68 AT3G51730 209 / 3e-68 saposin B domain-containing protein (.1) Lus10009099 [exp] 221 / 4e-66 AT2G38370 340 / 1e-107 Plant protein of unknown function (DUF827) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107300 [exp] 193 / 1e-60 AT3G51730 182 / 9e-58 saposin B domain-containing protein (.1) Potri.016G133400 [exp] 180 / 1e-55 AT3G51730 178 / 5e-56 saposin B domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03489 [flax] [poplar] SapB_2 Saposin-like type B, region 2 PF05184 [flax] [poplar] SapB_1 Saposin-like type B, region 1
Representative CDS sequence Show only first row Show all	>Lus10022750 pacid=23178648 polypeptide=Lus10022750 locus=Lus10022750.g ID=Lus10022750.BGIv1.0 annot-version=v1.0 ATGAAATCTTTGAATTTGAGGTATGGCGAAATTTTTTCTGGCGACGTACCTAATCAAAAGGTTAACTATTTTCTTGGAGGATCTCCTAAAGAAGAAGACG GAGATGAAGAAGAAGAAGAAGCAGAAGAAGAAGCAGCAGCAGCAGCTAAAGACAATTCCAATATGTCTCCTTCTACAATGGCTTCAGGTTTGTTCCAAGC TTCGCAATCCATGGATCCGAGAGCTGCGCTATTTCTTCTCCTTGTGTTAGCTGCTGGTAGCTGGAGTTGCCACGCCAGAGTAATCTCCACCACCGGCGAT GTGATTTTGAGAATCTCAGGGGAAAATCAGGGGCCAGGAAGTGGAATTCCTGCTTCTGAAATGGCTATGGAGGACCAAATGTGCACATTCTGCCAGCAGT TTAGTCGTCAGGCTCTTAGATACCTTAAGGATAACGAAACTCGGACCGAGATTGTCGAGTTCCTTCACAAAACGTGTTCTTACGTCCCTTACATGAAGAA AGAGTGCCTTAGTGTGGTGGACTATTATGTTCCTCTCTTCTTCTCGCAAGTTTCTGCTATTCGACCGGATGATTTGTGCCGAAAGATTAGCTTTTGTCAC GAGGCTGCAACAACCATTGCCTCCAAAGTTCAAGAAAACACATGTGGAATCTGCCATGACACTGTTTCTGAAGTGCTGGCCAAGTTGAAAGATCCCGAAA TTCAGTTGGAGATAATCGAGCTGCTCTTGACGGGCTGCAATTCGTTGGATAGTCGTAAAGCACAGTGCAAGAAGATCGTATTCGAGTACGGTCCTTTGGT CCTTACAAATGCAGAACAGTTCCTGGAGAAAACCGACATATGCGCTGTTCTACACGCTTGCAACAAGGTCGCTTCACCGTCTGGCGTGGCTGAATCCTGA
AA sequence Show only first row Show all	>Lus10022750 pacid=23178648 polypeptide=Lus10022750 locus=Lus10022750.g ID=Lus10022750.BGIv1.0 annot-version=v1.0 MKSLNLRYGEIFSGDVPNQKVNYFLGGSPKEEDGDEEEEEAEEEAAAAAKDNSNMSPSTMASGLFQASQSMDPRAALFLLLVLAAGSWSCHARVISTTGD VILRISGENQGPGSGIPASEMAMEDQMCTFCQQFSRQALRYLKDNETRTEIVEFLHKTCSYVPYMKKECLSVVDYYVPLFFSQVSAIRPDDLCRKISFCH EAATTIASKVQENTCGICHDTVSEVLAKLKDPEIQLEIIELLLTGCNSLDSRKAQCKKIVFEYGPLVLTNAEQFLEKTDICAVLHACNKVASPSGVAES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01800			saposin B domain-containing pr...		Lus10022750 [exp]	0	1
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10003932 [exp]	2.0	0.9127
AT1G04555			unknown protein		Lus10023715 [exp]	2.6	0.9164
AT4G32940		GAMMAVPE, GAMMA...	gamma vacuolar processing enzy...		Lus10024446 [exp]	2.8	0.8995
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Lus10024277 [exp]	6.0	0.8934
AT3G03890			FMN binding (.1.2)		Lus10013617 [exp]	6.0	0.8678
AT1G29800			RING/FYVE/PHD-type zinc finger...		Lus10029271 [exp]	6.0	0.8799
AT5G66900			Disease resistance protein (CC...		Lus10034761 [exp]	6.2	0.8774
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10001367 [exp]	7.1	0.8979
AT3G45310			Cysteine proteinases superfami...		Lus10033428 [exp]	8.1	0.9060
AT1G03250			unknown protein		Lus10012370 [exp]	8.5	0.8821

Compare expression of checked genes

Lus10022750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.