Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014158 [exp] 61 / 4e-11 AT1G06930 45 / 8e-06 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022751 pacid=23178539 polypeptide=Lus10022751 locus=Lus10022751.g ID=Lus10022751.BGIv1.0 annot-version=v1.0 ATGACCGCCAACAAACATCTCAGGCGCCGGCGCCGGCGCCCGCTCCTTCCAAAGCAAAGCGTGGAAGCCGGCGATGCGACAGCCCGCGCCCGCCGCTTGA CGCTCATAGTCGTGTGTCGCGGCGGACGTGGCGGAAGAGGAGGAGGAGGAGGGGTTGCGTTTCTTGAGGAAGCTCACCAACGAGCGGAGGAAGTGACGGT TGTTATTGTGTTTGACGTCGGTGGTCACCAGCTGATCACGTGGCGGAAGGTGGCGTCTGGTGGCGGCGGAGGAGAAGGAGGAGGAGAAGTCCTTGTGTCG GACGTTGACGCGTGCGGTGGTGGAGAAGTACGACGGAGGAGGGGTCAGAGGAGGGAGGATGGGGTCAGAGTAGAAGGAGTGTTTGGGAGTGCCGGGCTCG GATTCCCAGGTGAACGGGACAGCGACGGCGATGCCGGAGGAGGAGGGGCGGGGGGGAGGAGTGACGGTTGTTTTCTTCGTCGTCGTCGTTGTAGTCCCTG GAGAGGAGGTGGCTGTAGAATTTGTCAACGTCGTCGGTTTGGAGGTTAG
AA sequence Show only first row Show all	>Lus10022751 pacid=23178539 polypeptide=Lus10022751 locus=Lus10022751.g ID=Lus10022751.BGIv1.0 annot-version=v1.0 MTANKHLRRRRRRPLLPKQSVEAGDATARARRLTLIVVCRGGRGGRGGGGGVAFLEEAHQRAEEVTVVIVFDVGGHQLITWRKVASGGGGGEGGGEVLVS DVDACGGGEVRRRRGQRREDGVRVEGVFGSAGLGFPGERDSDGDAGGGGAGGRSDGCFLRRRRCSPWRGGGCRICQRRRFGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022751 [exp]	0	1
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10017879 [exp]	10.8	0.9188
AT1G70840		MLP31	MLP-like protein 31 (.1)		Lus10020497 [exp]	12.6	0.9221
AT5G47530			Auxin-responsive family protei...		Lus10010498 [exp]	15.9	0.9006
AT1G49770	bHLH	ZOU, RGE1, bHLH...	ZHOUPI, RETARDED GROWTH OF EMB...		Lus10024812 [exp]	23.2	0.9066
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	25.5	0.9151
AT3G53400			unknown protein		Lus10026502 [exp]	26.4	0.9122
AT3G61660			unknown protein		Lus10033949 [exp]	29.4	0.8957
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10006668 [exp]	31.7	0.9105
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10028273 [exp]	33.1	0.8996
AT1G09440			Protein kinase superfamily pro...		Lus10030863 [exp]	36.1	0.8998

Compare expression of checked genes

Lus10022751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.