Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08850 616 / 0 ATRAPTOR1B, RAPTOR1B HEAT repeat ;WD domain, G-beta repeat protein protein (.1) AT5G01770 568 / 0 RAPTOR2, ATRAPTOR1A, RAPTOR1A RAPTOR2, HEAT repeat ;WD domain, G-beta repeat protein protein (.1) AT5G08390 62 / 1e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 61 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G52250 54 / 1e-07 EFO1, RUP1 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 55 / 2e-07 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 53 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT1G52360 51 / 2e-06 Coatomer, beta' subunit (.1.2) AT3G15980 50 / 4e-06 Coatomer, beta' subunit (.1.2.3.4.5) AT2G16780 50 / 4e-06 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014156 [exp] 774 / 0 AT3G08850 1330 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10025263 [exp] 663 / 0 AT3G08850 2054 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10009083 [exp] 652 / 0 AT3G08850 2031 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10014157 [exp] 161 / 4e-46 AT3G08850 160 / 9e-46 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10033092 [exp] 64 / 3e-10 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10002324 [exp] 61 / 9e-10 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5) Lus10026094 [exp] 59 / 2e-09 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10041007 [exp] 59 / 7e-09 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 59 / 7e-09 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G106600 [exp] 644 / 0 AT3G08850 1968 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Potri.016G132000 [exp] 612 / 0 AT3G08850 1862 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Potri.008G002300 [exp] 63 / 4e-10 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 59 / 5e-09 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 54 / 3e-07 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G179200 [exp] 53 / 6e-07 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.003G056300 [exp] 53 / 7e-07 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.015G087200 [exp] 51 / 2e-06 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G057600 [exp] 49 / 4e-06 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) Potri.009G115300 [exp] 49 / 5e-06 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10022752 pacid=23178585 polypeptide=Lus10022752 locus=Lus10022752.g ID=Lus10022752.BGIv1.0 annot-version=v1.0 ATGGCAATGGACGATTTAACGGCGACGCGATTCACGCAGTCTTCCACTTCGGCGGTGGTCTCCGATCACTACGACGACGATGGCGGCGTCGGGGATTCAA GAAGGGACTCCGAGGCGGATGCTAGTACAAGCTACGGGAATGCGGCTACTAGCATGGCGTATTTGCCTCAGACTATAGTGTTGTGCGAGCATCGGCACGA GGCGCTTGAGGTTTCTGTGCCTATAGGTCCTTCTGACAGTGGGGTTGTGTCCAAATGGCGTCCCAAGGATCGAATGAAGACCGGATATGTAGCTCTAGTT TTATGTTTAAACATTAGTGTTGATCCACCTGATGTAATAAAGATTTCACCTTGTGCGAGAATGGAGTGCTGGATAGATCCATTTTCTATGCAACCTACAA AAGCTCTTGAAACAATTGGGAAAACCTTGAGTCTTCAATATGAAAGATGGCAACCAAGGGCTAGGTATAAGGTACAACTTGATCCTTCTGTGGAAGACGT GAAAAAACTTTGTAATACATGTCGCAGAAATGCTAAATCCGAGAGAGTTTTATTTCATTATAATGGTCATGGTGTCCCAAAGCCAACTGCTAGTGCTGAA ATATGGGTATACAATAAGAGTCTTCTCCCTCAATCAACAATCTACAACTGGAGTGCTGGTCATTTTTCCAAGTCGCTTCTTACTGCCACTGATGATACCG AAGAGATAGTTATTAGACGAGAAGAGAGGGAGAAGTTTGGCTTGGAACACATTGCAAAATGCCAGCACACTTCTGTTGGCAAGCTTAATAACCAAATTGC TGGATGGGATACAAAGTTTGAAGGTGGCACGAGGGCGACTTTGCTGCATCCTTTTTCTCCTATTGTAGTTGCTGCAGATAATAATGAACGAATCAGGGTG TGGAACTATGAAGAAGCTACGCTTCTCAATGGGTTTAATAATCATGATTTTCCTGACAAAGGAATTTCTAAGCTGTGCCTTGTGAATGAGCTTGATGACA GCTTGCTTCTTGTTGCTTCCTGCGATGGTAACATTCGGATTTGGAAAGATTACTGTGTAAAAGGGAAGCAAAAAATTGTTACTGCATTCTCTTCTATCCA AGGCCATAAACCGGCCGCACGTAGTTTGAATGCTATTGTTGATTGGCAGCAACAGTCTGGCCATCTATATGCTTCCGGTGAGGAATCCACTGTAATGCTT TGGGATTTGGAGAAAGAACAGCTTGTCAATTCCATTCCAACATCATCGGATTGTAGAGTTTCATCACTGTCTGCTTCTCAAGTTCATGGAGGTCAGTTTG CAGCGGGCTTTGTGGATGGTTCAGTAAGATTATATGATGTGAGGACACCTGAAACGCCTGTCTGTACAATGCGACCACACACCCAAAAGGTCGAACGAGT CATGGGTATTGGGTTTCAACCAGGACTTGATCCAGGAAAGATCGTGAGTGCATCTCAGGCCGGTGATATTCAATTCTTGGACATCAGAAATCAAAGAGAT GCCTACCTAACAATCAACGCCCACAGAGGCTCACTGGCTGCATTATCTGTTCATAGGCACGCTCCCATTATCGCCAGTGGCTCGGCAAAACAGATCATTA AAGTATTCAGTCTCGAGGGCGCACTTATTGGGACCATCCGGTATTACTCTACCTTCATGGCCCAGAAGATTGGTCCTGTGGGTTGCCTTGATTTCCATCC TTACCAACCTTTGCTTGCATCTGGTGCCGCTGATGCTTACGTATCTATCTGGGCTGATGATAACACCCGAGCAAGGTGA
AA sequence Show only first row Show all	>Lus10022752 pacid=23178585 polypeptide=Lus10022752 locus=Lus10022752.g ID=Lus10022752.BGIv1.0 annot-version=v1.0 MAMDDLTATRFTQSSTSAVVSDHYDDDGGVGDSRRDSEADASTSYGNAATSMAYLPQTIVLCEHRHEALEVSVPIGPSDSGVVSKWRPKDRMKTGYVALV LCLNISVDPPDVIKISPCARMECWIDPFSMQPTKALETIGKTLSLQYERWQPRARYKVQLDPSVEDVKKLCNTCRRNAKSERVLFHYNGHGVPKPTASAE IWVYNKSLLPQSTIYNWSAGHFSKSLLTATDDTEEIVIRREEREKFGLEHIAKCQHTSVGKLNNQIAGWDTKFEGGTRATLLHPFSPIVVAADNNERIRV WNYEEATLLNGFNNHDFPDKGISKLCLVNELDDSLLLVASCDGNIRIWKDYCVKGKQKIVTAFSSIQGHKPAARSLNAIVDWQQQSGHLYASGEESTVML WDLEKEQLVNSIPTSSDCRVSSLSASQVHGGQFAAGFVDGSVRLYDVRTPETPVCTMRPHTQKVERVMGIGFQPGLDPGKIVSASQAGDIQFLDIRNQRD AYLTINAHRGSLAALSVHRHAPIIASGSAKQIIKVFSLEGALIGTIRYYSTFMAQKIGPVGCLDFHPYQPLLASGAADAYVSIWADDNTRAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10022752 [exp]	0	1
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10014628 [exp]	1.4	0.8308
AT1G55750			BSD domain (BTF2-like transcri...		Lus10020465 [exp]	1.7	0.8371
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040532 [exp]	7.1	0.8293
AT2G43410		FPA	RNA binding (.1.2.3.4)		Lus10019359 [exp]	7.2	0.8242
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10028588 [exp]	11.0	0.7634
AT4G22960			Protein of unknown function (D...		Lus10014145 [exp]	11.2	0.7545
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10008297 [exp]	17.9	0.7632
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Lus10029876 [exp]	18.6	0.7525
AT5G12400			DNA binding;zinc ion binding;D...		Lus10014918 [exp]	19.1	0.7633
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Lus10001251 [exp]	19.4	0.7325

Compare expression of checked genes

Lus10022752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.