Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38410 423 / 6e-140 ENTH/VHS/GAT family protein (.1) AT5G01760 371 / 2e-121 ENTH/VHS/GAT family protein (.1) AT4G32760 298 / 6e-92 ENTH/VHS/GAT family protein (.1.2) AT1G76970 254 / 7e-78 Target of Myb protein 1 (.1) AT1G21380 255 / 2e-77 Target of Myb protein 1 (.1) AT3G08790 257 / 4e-77 ENTH/VHS/GAT family protein (.1) AT5G63640 181 / 3e-50 ENTH/VHS/GAT family protein (.1) AT5G16880 132 / 2e-33 Target of Myb protein 1 (.1.2.3) AT1G06210 98 / 8e-22 ENTH/VHS/GAT family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014155 [exp] 973 / 0 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10025264 [exp] 575 / 0 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10022140 [exp] 286 / 8e-87 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10018948 [exp] 253 / 2e-77 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1) Lus10028649 [exp] 259 / 2e-76 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10029739 [exp] 251 / 6e-76 AT1G21380 518 / 0.0 Target of Myb protein 1 (.1) Lus10042770 [exp] 245 / 1e-73 AT1G21380 514 / 4e-180 Target of Myb protein 1 (.1) Lus10022667 [exp] 197 / 2e-56 AT5G63640 450 / 1e-156 ENTH/VHS/GAT family protein (.1) Lus10011689 [exp] 197 / 3e-54 AT3G08790 461 / 5e-154 ENTH/VHS/GAT family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G131900 [exp] 556 / 0 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.006G106500 [exp] 546 / 0 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.006G241000 [exp] 285 / 3e-87 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.018G039100 [exp] 281 / 1e-85 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.005G184900 [exp] 271 / 4e-83 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.002G075500 [exp] 266 / 2e-81 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.T010700 [exp] 182 / 3e-51 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.T005401 [exp] 182 / 3e-51 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.004G138600 [exp] 179 / 6e-50 AT5G63640 447 / 1e-155 ENTH/VHS/GAT family protein (.1) Potri.013G082500 [exp] 136 / 8e-35 AT5G16880 553 / 0.0 Target of Myb protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03127 [flax] [poplar] GAT GAT domain CL0009 [flax] [poplar] ENTH_VHS PF00790 [flax] [poplar] VHS VHS domain
Representative CDS sequence Show only first row Show all	>Lus10022753 pacid=23178518 polypeptide=Lus10022753 locus=Lus10022753.g ID=Lus10022753.BGIv1.0 annot-version=v1.0 ATGGCTTCATCGTCTTCCGCTACGGTGGCGGTGGACAAAGCCACCAGCGACCTCCTCATCACGCCTGACTGGACCATGAATATCGACATCTGCGATTCCA TCAACTCTAATCACTGGCTGGCGAAAGATGTAGTGAAAGCGGTGAAGAAGCGATTGCAGCATAAGAACCCCAGAGTTCAATTTCTTGCTTTAACGTTATT GGAGACGATGGTGAAGAATTGTGGCGATTTCGTCCATTTCCAGATTGCGGAGAAGAATATATTGGGTGAGATGGTGAAGATCGTGAAGAAAAAGACAGAC ATGCAAGTGAGGGACAAAGTCCTGGTTCTGCTAGACTCCTGGCAAGAGGCTTTCGGTGGGCCTGGAGGAAAATATCCTCAGTACTACTGGTCTTACGAGG AGTTGCGGCGTTCTGGAGTACCGTTTCCCCAGCGTGCTTTGAATGCTGCTCCAATATTTACTCCACCACTAACCCATTCGACATTGAGACCTGCTGAACC TGGATATGGAATGCCGGGAGGTTCGTCCAGAAGACTTGATGAAACCATGGCTACCGAGATTGAAGGGTTAAGTTTGTCAAGCCTAGAATCCATGCGCAAC GTAATGGAGCTTTTGGGTGACATGTTGCAAGCTGTTAGCCCCGGCGATCGAGAGGCTGTAAAAGAGGAGGTTATAGTTGACCTTGTTGAACATTGTCGAT CCAACCAGAAGAAATTGGTGCAGATGCTCACTACCACCGGGGATGAGGAAGTCCTTGTTCGCGGCCTTGAATTAAACGACAACCTGCAAATTTTTCTGGC AAAACACGATGCTATAGCTTCGGGTTTGCCTATCCCCTCTCCGGTTTCGGATTCAAGTCCTAAGCAACTAGAAGGATCTTCTTCACGCACCAAACCACCT GAAGTAAAGAACAGTCCTCCTAGCCCCGGCACTGAACCAATCACGACAAGAACTACTCTGTCAACAAATCAGGCTAATGAAGATGATGAAGAAGAGGAGG ATGACTTTGTCAAACTAGCTCGCAGGCATACCAAGAGCCAGCCTAGTCCAACACATAGCAGTGAATTCACTGGAGCCCTTGTACCCATCGAGACCGGACA AACCTCCCCTGATGCTGAATCTTCATTCTCCGCCACATCGAATGCTCTAGCGATCGTCGAACCAGTTAAGAACACACAAGAGCAGGACATCATCGACCTT TTAAGTATCACCTTGTCAACCGACTGGACTTCTCCCCAACCCAATACACCTCATCATCCAGCAGCATCAACCGCGGAACAAAGTTTGCCTCAGATACCCG TTTCCTCCGGCGCCCAAGCTTATCCCGGAAGCCAAGGTCCCGCACCAGCACCCTTCGACAGCTACGTCGTTCCATGGGCCCAGCCTCAACCTCAGCCACA ACCTCAGCCACAACCTCAGCCACAACCTCTGCACTATCACCAACGGCAGTTCCGGCCTCAGTTTGAACCACAATTACAGCAGCAGTTTCAACCACAGCAA CAGTATCAGTATCCTCAATACACTTCAGCTTATCCACCACCGCCATGGGCAGTGACTCCAGGTTATGCCAACGGTAGTAGCAGCCAAAGTTACTCTCCAG CTAACAGTACGTTTTCTAGCGTTGCCACGTCATTTCCACATAGAACAGCAGCAGCTTCACCCATGCAGCAGCAGAATTATGGCAAGTCTTCAAACGGAAG CAACGGAACGGCTATGAATGGAGACCCGTTAGTGGGTTTCGGGGCAAGAGCTCCATCTTCGCAACCCGCTGCATCGAAGCCGTATGTGCCCTCGTACAGG CTGTTCGAGGACCTGAACGTTCTTGGAAATGCAGAAGGAAAGTTCAAGGTGAATGGCGGTACGGCTCCGAGTATGTCGAGTTCTTCTGGGCAAAGTATGG TAGGTGGTAGGAAGTGA
AA sequence Show only first row Show all	>Lus10022753 pacid=23178518 polypeptide=Lus10022753 locus=Lus10022753.g ID=Lus10022753.BGIv1.0 annot-version=v1.0 MASSSSATVAVDKATSDLLITPDWTMNIDICDSINSNHWLAKDVVKAVKKRLQHKNPRVQFLALTLLETMVKNCGDFVHFQIAEKNILGEMVKIVKKKTD MQVRDKVLVLLDSWQEAFGGPGGKYPQYYWSYEELRRSGVPFPQRALNAAPIFTPPLTHSTLRPAEPGYGMPGGSSRRLDETMATEIEGLSLSSLESMRN VMELLGDMLQAVSPGDREAVKEEVIVDLVEHCRSNQKKLVQMLTTTGDEEVLVRGLELNDNLQIFLAKHDAIASGLPIPSPVSDSSPKQLEGSSSRTKPP EVKNSPPSPGTEPITTRTTLSTNQANEDDEEEEDDFVKLARRHTKSQPSPTHSSEFTGALVPIETGQTSPDAESSFSATSNALAIVEPVKNTQEQDIIDL LSITLSTDWTSPQPNTPHHPAASTAEQSLPQIPVSSGAQAYPGSQGPAPAPFDSYVVPWAQPQPQPQPQPQPQPQPLHYHQRQFRPQFEPQLQQQFQPQQ QYQYPQYTSAYPPPPWAVTPGYANGSSSQSYSPANSTFSSVATSFPHRTAAASPMQQQNYGKSSNGSNGTAMNGDPLVGFGARAPSSQPAASKPYVPSYR LFEDLNVLGNAEGKFKVNGGTAPSMSSSSGQSMVGGRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01760			ENTH/VHS/GAT family protein (....		Lus10022753 [exp]	0	1
AT5G47860			Protein of unknown function (D...		Lus10042222 [exp]	3.7	0.8373
					Lus10024821 [exp]	6.2	0.8373
AT3G20340			unknown protein		Lus10021518 [exp]	8.1	0.8113
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10030137 [exp]	8.4	0.8234
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035590 [exp]	8.5	0.8182
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028639 [exp]	8.5	0.8279
AT4G21865			unknown protein		Lus10023724 [exp]	8.5	0.8311
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10011578 [exp]	12.0	0.7843
AT1G53050			Protein kinase superfamily pro...		Lus10033684 [exp]	12.7	0.8202
AT1G48040			Protein phosphatase 2C family ...		Lus10037832 [exp]	15.4	0.8053

Compare expression of checked genes

Lus10022753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.