Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01750 207 / 9e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G11740 174 / 4e-55 Protein of unknown function (DUF567) (.1) AT2G14560 159 / 3e-49 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G33840 159 / 2e-48 Protein of unknown function (DUF567) (.1) AT3G16900 121 / 2e-34 Protein of unknown function (DUF567) (.1) AT3G56180 105 / 3e-28 Protein of unknown function (DUF567) (.1) AT3G10986 92 / 3e-23 Protein of unknown function (DUF567) (.1) AT3G15810 90 / 7e-22 Protein of unknown function (DUF567) (.1) AT1G80120 73 / 1e-15 Protein of unknown function (DUF567) (.1) AT2G38640 61 / 2e-11 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014154 [exp] 387 / 6e-139 AT5G01750 206 / 2e-67 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10002477 [exp] 269 / 5e-92 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10001255 [exp] 269 / 5e-92 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014021 [exp] 261 / 4e-89 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10019896 [exp] 221 / 4e-73 AT5G01750 169 / 3e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025253 [exp] 195 / 4e-63 AT5G01750 169 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025254 [exp] 195 / 7e-63 AT5G01750 166 / 1e-51 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009092 [exp] 191 / 1e-61 AT5G01750 161 / 7e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009093 [exp] 179 / 6e-57 AT5G01750 147 / 1e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G130700 [exp] 253 / 5e-86 AT5G01750 209 / 2e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130500 [exp] 253 / 5e-86 AT5G01750 218 / 6e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131701 [exp] 252 / 1e-85 AT5G01750 201 / 2e-65 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131850 [exp] 252 / 2e-85 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131800 [exp] 247 / 2e-83 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130400 [exp] 192 / 8e-62 AT5G01750 181 / 3e-57 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131100 [exp] 182 / 8e-58 AT5G01750 154 / 3e-47 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130800 [exp] 179 / 5e-57 AT5G01750 162 / 4e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131300 [exp] 174 / 8e-55 AT5G01750 143 / 7e-43 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131400 [exp] 161 / 7e-50 AT5G01750 147 / 3e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10022754 pacid=23178594 polypeptide=Lus10022754 locus=Lus10022754.g ID=Lus10022754.BGIv1.0 annot-version=v1.0 ATGGGCACAGGGTGCGACGTCGTAGTAGTGCCGGCCGAGGAGGATCCCAACCAGCCATTGGTTAACCCGGTGGTTGTGGTCGGACCACAGTACTTGGCCG ATTACCCTGTCGACCTCACGGTTGCCTCCAAGACCCTTACCCTAGGGGAGAACGATTTCACCATCAACGACATCAACGGGACCCTCATTTTCAATGTCAA GAGCAAGTTGTTGAGCCTTCATGATCGTCGGCGGATGCACGATTCTGCCGGGAACGTCATCATTTCCCTTCAACAAAAGATATTGAGTGCCCACAGGAGA TGGCAAGCCTTCAAAGGAGACAGTACAGAGTACAAAGATCTAATCTTCAGTGTGAGGAAATCGTCCATCCTGAAATACAGGGGTAAGTTAGATGTGTTCT TGGCCGAGAACAAGAAGGAAGAATCGCCTGATTTCAGGATCAAAGGTGGCTGGGCTGAGGGTTCCTGCACCGTTTACCTAGGAAAATCCAAGACCATCAT TGCCAAGATGCATAGGGGGCAGAGTCTGAAAGTGGTATTCCTTGATGCTGACACTTTCAAAGTGACTGTGTATCCCCAAGTTGATTATGCCTTCATCGTT GCACTTGTAGTTATTCTTGATGAGATCAATGCAGATCGTAGTGGTGATGACTAG
AA sequence Show only first row Show all	>Lus10022754 pacid=23178594 polypeptide=Lus10022754 locus=Lus10022754.g ID=Lus10022754.BGIv1.0 annot-version=v1.0 MGTGCDVVVVPAEEDPNQPLVNPVVVVGPQYLADYPVDLTVASKTLTLGENDFTINDINGTLIFNVKSKLLSLHDRRRMHDSAGNVIISLQQKILSAHRR WQAFKGDSTEYKDLIFSVRKSSILKYRGKLDVFLAENKKEESPDFRIKGGWAEGSCTVYLGKSKTIIAKMHRGQSLKVVFLDADTFKVTVYPQVDYAFIV ALVVILDEINADRSGDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01750			Protein of unknown function (D...		Lus10022754 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10012039 [exp]	3.9	0.8729
AT4G27300			S-locus lectin protein kinase ...		Lus10038555 [exp]	6.0	0.8723
					Lus10012313 [exp]	7.9	0.8839
AT3G19990			unknown protein		Lus10038848 [exp]	10.9	0.8873
AT1G21890			nodulin MtN21 /EamA-like trans...		Lus10021201 [exp]	12.4	0.8763
					Lus10032104 [exp]	21.9	0.8429
AT4G21340	bHLH	bHLH103, B70	basic helix-loop-helix (bHLH) ...		Lus10005959 [exp]	39.0	0.8368
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10039640 [exp]	41.7	0.8383
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10042035 [exp]	42.9	0.8308
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10003902 [exp]	51.8	0.8533

Compare expression of checked genes

Lus10022754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.