Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01740 132 / 7e-39 Nuclear transport factor 2 (NTF2) family protein (.1) AT3G10985 61 / 4e-12 WI12, ATWI-12, SAG20 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029439 [exp] 303 / 4e-105 AT5G01740 128 / 3e-37 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10001261 [exp] 193 / 9e-62 AT5G01740 139 / 1e-41 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10017421 [exp] 100 / 5e-26 AT5G01740 115 / 2e-32 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10010223 [exp] 102 / 9e-25 AT5G17680 218 / 6e-58 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G129600 [exp] 163 / 3e-51 AT5G01740 179 / 2e-58 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.016G129500 [exp] 153 / 3e-47 AT5G01740 179 / 2e-58 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.013G153801 [exp] 80 / 5e-18 AT3G10985 88 / 3e-22 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1) Potri.019G125900 [exp] 78 / 8e-18 AT3G10985 93 / 9e-25 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1) Potri.010G182200 [exp] 65 / 2e-13 AT3G10985 123 / 8e-38 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1) Potri.008G075200 [exp] 62 / 1e-12 AT3G10985 131 / 5e-41 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF07107 [flax] [poplar] WI12 Wound-induced protein WI12
Representative CDS sequence Show only first row Show all	>Lus10022755 pacid=23178532 polypeptide=Lus10022755 locus=Lus10022755.g ID=Lus10022755.BGIv1.0 annot-version=v1.0 ATGCACTTCTCTAGACAGTTGACCGTCCGCAAAGAGTTGACCTCCTCTCTCTCAACCCTCTTCTCCAAATTAAGCTCAAGAAAAATCCTCTTCCTTTCCG GCAGCCACAAATCTCCGATCATCGACGAATCCCCATCCAAATCATCCACGTCCAAATCCGCAAAGTACAAATCCATCATCGGATCACTCTACAAGACATT ACTAGCCGGATCCACGGGCCAAACAACAAGAGATAAGATCACTGGCTATGACCACCAAATCATAGTCGGTGATTTGGAGTGGTGGTTTCACGGACCGCCA GGCTGCAACCACATGATGAGAATGCTGACTGGGCAGTCCGTTGGTAACGGACTGGCTAATCAACTGTTCAGGTTCGAGCCGAGGAGTATCGAGGTTGTCG GAGACTGCGTGATTGCCGAAGGATGGGAAGGCGACAAAGTTTACTGGGTCCACGTTTGGACGGTGAGAGATGATGATGATAACAATAATGGGGCTATGGT GATCACTCAGTTTAGAGAATATTTCAACACGTGGCTCACCGTGAAAGATGTCACCGGCGGCAGTAGCCGTCGCCTGATTGTCGATGAGGAGGGGAAGAAG CTTACGATGTGGAGGAGCCAGCCGGTGGGGGATGTTTTCGAAAGGTCTTTGCCTGGTCTTGTTCTGGCCATTTGA
AA sequence Show only first row Show all	>Lus10022755 pacid=23178532 polypeptide=Lus10022755 locus=Lus10022755.g ID=Lus10022755.BGIv1.0 annot-version=v1.0 MHFSRQLTVRKELTSSLSTLFSKLSSRKILFLSGSHKSPIIDESPSKSSTSKSAKYKSIIGSLYKTLLAGSTGQTTRDKITGYDHQIIVGDLEWWFHGPP GCNHMMRMLTGQSVGNGLANQLFRFEPRSIEVVGDCVIAEGWEGDKVYWVHVWTVRDDDDNNNGAMVITQFREYFNTWLTVKDVTGGSSRRLIVDEEGKK LTMWRSQPVGDVFERSLPGLVLAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01740			Nuclear transport factor 2 (NT...		Lus10022755 [exp]	0	1
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10010501 [exp]	2.2	0.7808
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10040354 [exp]	3.9	0.7466
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10030442 [exp]	8.5	0.7528
					Lus10039495 [exp]	9.2	0.7347
					Lus10008920 [exp]	9.3	0.7552
AT1G65870			Disease resistance-responsive ...		Lus10030483 [exp]	14.7	0.7671
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020252 [exp]	15.0	0.7281
					Lus10010697 [exp]	15.6	0.7197
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10031478 [exp]	16.3	0.7102
					Lus10008327 [exp]	16.4	0.7197

Compare expression of checked genes

Lus10022755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.