Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38440 418 / 4e-123 ITB1, DIS3, SCAR2, WAVE4, ATSCAR2 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) AT5G01730 310 / 5e-87 ATSCAR4, WAVE3 SCAR family protein 4 (.1) AT2G34150 190 / 2e-49 ATSCAR1, WAVE1, ATRANGAP2 WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1, SCAR family protein (.1.2) AT1G29170 191 / 3e-49 ATSCAR3, WAVE2 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) AT4G18600 164 / 2e-40 SCARL, ATSCAR-LIKE, WAVE5 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 5, SCAR family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029437 [exp] 2373 / 0 AT5G01730 410 / 6e-119 SCAR family protein 4 (.1) Lus10001897 [exp] 208 / 5e-54 AT1G29170 305 / 1e-88 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) Lus10013904 [exp] 207 / 8e-54 AT2G34150 300 / 6e-87 WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1, SCAR family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105800 [exp] 768 / 0 AT2G38440 427 / 2e-126 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) Potri.016G129000 [exp] 578 / 4e-178 AT2G38440 444 / 2e-130 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) Potri.004G057100 [exp] 214 / 3e-56 AT1G29170 447 / 3e-139 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) Potri.011G066100 [exp] 190 / 1e-48 AT1G29170 485 / 7e-154 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022757 pacid=23178567 polypeptide=Lus10022757 locus=Lus10022757.g ID=Lus10022757.BGIv1.0 annot-version=v1.0 ATGCCGTTGACGAGGTACCAGATAAGGAACGAGTACGGCTTGGCCGATCCGGAGCTGTACAGAGCTGCCGATAGAGATGATCCCGAAGCTCTCTTGGAAG GCGTCGCCATGGCTGGCCTCGTTGGTGTGTTGCGGCAGCTCGGCGACCTTGCTGAATTCGGTTTGTTTGAGCTGGAATTAGTTCAATCGCTAGCTGAATT CCCCGTTTGCTTTGATTTTGTTGCATTTGAGGTGGTTAATCTTGGTCAGAATTCGGCGGTGGCTGAGTTTGCTGCTGAGATTTTTCATAACTTGCACGAA GAAGTAATTACAACTGCAGCAAGAGGTCACAGTCTGATGGCTCGTGTACAGCAGCTCGAGGATGAAGTTCCTTCAGTTGAGAAGGCGTTCCTATCTCAAA CTGACCATTCGTCGTTCTTTACAAATGGAGTGGGCGTTGATTGGCGTCCTAATTTGCACATGGAGCAGAATCTGATCACTCGCGGAGATTTACCCCGGTT TGTAATGGATTCTTATGAAGAATGTCGGGGTCCTCCGAGGCTGTTTCTATTGGACAAGTTTGATGTTGCAGGAGCAGGTGCTTGTTTGAAGCGATACACT GATCCCTCAATCTTTAAAATCGAAGCTCCTACCTCTACGACAATGGAAGCACAGAGAGAGAAGAAAGCTCGAAAAATCAAGAAGAAAGGAACTCGGTGGA GGAATGGAGAAACTCCAGATGCAACTCCAGCATCTCATGCAAAATTACATCAGCTTTTTCTTGAAGAGCGTGTTGCAAATGGCCATTCTGATCCGGCTCG TTTAGTAAAATTGAAAAGAAGGCAGTTAAACGGATCGTCATTTAATATGAAATCTGGGAAAAGCTACATGGAGAAATTCCTGAAGACTCCTTCACCAGAC AATAAAGCAGTGTGCGAGGCTTCTGTGAATCCATCACTCTTAGCTTTAACACAAGATAACTATAGTGAATCGGGGCTTGAGATTGTTAAGATCGCTTCTG TAAGTCCCACTAAGCAGTTACCACAAGATGAGGGAAGCCATAGTTCCTCACCTGAGGTCGAAGACACTGGATCAGAACACTTGCATGATGATTTGAATGG CAAGGATACTGATAAATGGATTGTGAAGGTGTCTGATATTGTTGCTGATTGTGAAACAGATAAATCTCCAGTTCATAACATGTCGATTGGGAAAGAATTA GCTATTTATGCAGCTGGAAGAACTGATAGTTTAGATGAAGACCATTCAGATGACATGATCAGTGAGGTAGATAACTACATGGATGCTCTTACAACCATGG AGTCAGAAATAGAGAGTGACAATGACTATAAATCTAAACCACATGGCGCCCTCAAGTGGGTGAGTCGCCAGGCACAGTCTGATGTCAGTGAGGAACGGCC TGTAATTCAACCTAAGTTTCTTAATTCACAATCTTACAGGAATTCCTCATCTGACGATGGAAACAGTTCACTCTACAAAGGAGGATCTAGTATTTCGTAC ACTGATTCTCTGAGCAATGTGGCTGAGAATGTTCAATCTGATGGGGAAGTGCAATCAAAAGTTTGTCGTTCTACTGAAGACAGCGTCGTGGTAACTTCCG TTTTGCAGTCAGACAATCCATCTCCTCAATTAGGGACTCAATCTCGCGAGCTTGAAGACGCAACTGATATTTGCTCCGAGGAAGAGAAAATCCAAGAGCC TGAACTAGCTTCATCGGATTCGCAGGCAGAATCTCCGAGGAAGAGAAAATCCAAGAGCCTGAACGAGCTTCATCGGATTTCTAATACAGGGACTAGTGTT CCAGTGGCAGACTATTCAGTGGTTTCTTTAGCAGGAAAACCTTCATATGGAACAATATACGACAAAGAAGTTTCACCTGAGTTAGGAGCACTTGATCTTG AAACCAACGAAAATCTAGAGGTTTCTTCTGTTGCTTCATCTGATATCCATTGCCAGCTAAAACCTGGTGATCCTTCTGCAGTTCTTAGTGAACGTAATTC TGTTGATGATCTTGAACAAGGAGATCCTAAAGCAGTGCCTAGAAGTGCATCAGGTGTGTCAGATCATGTACAAAGCACTCATGACGATTCCATACATGAT ATGTGTGGAACAAAGTATTCAAATGATATTGGAAATATTCTGGAGGAGAATGGTTTTCCACAGGAAGTTGAAGTGCACTCGGGTGGTTTTCCATCTGAAA TGACTGATCAGTTGGCGACTGAAGTAGATAATTTGGTTGGAGATACAGAGGTCACTGATAGCAACGACACATTGAATAAAGACTCCATGCAATCCCTTCC CGAGTCCGCTGAAGTAGGCCTTTTCAATGATGAGCAGGAAGCAGACCTTGAAGAAATGGTCGCTGTTTCAGATGCAGAGGACATTTCAGAACACACATTC AACCAGAATAATTTGGATGCACTTAGTGGAAATTCCACCATTCTTCCAGAACGTTCATTTGAATATTCTGGTGAATCTGGGAGGCAGGAACCAGTCAACT TGAACGATATTGCACCAGAGACTGTTGAAACAAAGGACGTGGTTGAATCTATCGCATCTAATGTTGATGGTCATGCAAATGAAATTCTCTGTCCATCCAT TGATGTGCAAGAAAGCCTTTCAAGTTCAGATGACCAACATCAAGGTGGAGCAAACCTTTCTCACAATATTTCATCAGAGGCTTATCTTGAAGCTGAGGCA TATGTGGAAGTCATTCCAAAAGGTTCAGAATTGAGTATGGGTGAATCCATCTTTTCCGAACCAGGTTCAAGCGTTCAACAACAAGACAATATGAGTGTAG TTGATGCCAGCGTAGGACAAGCTTCAGGTTTCACTTCATCTCAACAGATTTCTCAATGTGAGGCAGGAACTCCAAAAATGTCGGCAGGGTTCCGTGATGA TCAAATCAACACAGAGTCTATTCACGTTGATAAAGGAACTTCAGAGATGGAACGTATGACCATGAATTCTGCAGATCTCGATCAAGCAGCATCACATCCC TCGTTTATATCAGAGTCCAGAACTCCTTCTGAGAAAGCCTGGGATCAAACTGATGAGAGTTGTCCGGAACCAGATGAAGCAGGCTCTAGCTCATCAAATC TCGAGTTCCTGAACAAGGAAACTGTACCTTCTGAACACGAAAGAAATCAGGATGGCCATTCCATGACCTCTGTTATAAATCCTTCAAGCCAAGAAATTTT GCTGCCATCAAACCAGGACCTTCACAGTACTGACTCAGCAGGCAATACATTTGGTTTCGCCCCTAATGGACTGGACACTCTCTCCAGTACACAATATGTA AGTCGGGATGAAATGCCACCAATGCCACCAATGCAATGGATTATGGGAAAGTTTCCAATTGGGTCACTTGGTAATCTTCCAATGCAACCGCGTGCAGCTG ATGAGAAAGCTGAACCTGGCTTAGACAGAGAGATTGTGGAGTCTTCAAACCAGTGCTCGAGTAATAATATTGAAGATAGTCAGAAAGTTCCAGGCCTGTC TATGGATTCAACAGGAAATTCCTCCCAGCCGAATCCCTTACCGGTTGAATTTCCATCAGTTGCTGATACTGCATGCATGCAAAAGGATTCACATCCGATC GAAGAAGCATCGGGTCCGGTAAACCCAATTTCGATGTCGGAAGATGTATCTCACAACGATCCTGAGATCAAAGACCTTCCATCAGCAGACTTGAAGCGAT CTAGTCCAGATTCCTTGGGTGATACATCTTCATTAGCTGATGCTGTGATGTCGTCTCAGGACCAAGCCAAACTAATCTCTAATGGAATAGCATCGAAACC AGATCTCGACCCCAAACTAGCCGAACATTGTGTAGAAAGCACAGGAAGGGGACCGGTGGATGCTCTGGAGGAATCTTTACCAATGGAAAAGGAGCAACTG CAGCAAAATGTGCTTAATTCCTACGGAGGTACATCCTGGCCTCCAACGTCGTTAGCCCTGCCGCCATCCTACGAACTCGGAAAGGCAAATGGAAACAAAC TTCCTCGACCCAGAAATCCTCTGATCGATGCTGTTGCTGCAAACAAAAGCAAGCTGAGGAAGGCAGGTGAACGAGTTCAGCCACAGGCCGGACCGAAGGT GGAAGAAAGAGATACATTACTCGAACAGATCCGGACAAAGTCCTTTAATCTGAAACCCGCAGCAGCAACACGGCCTAATATGCGTCCAAGCATGCCCGGG ATTCACGGTCCGAAAACTAACCTTAAAGTTGCTGCTATCTTGGAGAAAGCAAATGCAATCCGCCAGGCGTTGGCTGGGAGCGATGAAGACGATGATGATA ACTGGAGCGACTCTTGA
AA sequence Show only first row Show all	>Lus10022757 pacid=23178567 polypeptide=Lus10022757 locus=Lus10022757.g ID=Lus10022757.BGIv1.0 annot-version=v1.0 MPLTRYQIRNEYGLADPELYRAADRDDPEALLEGVAMAGLVGVLRQLGDLAEFGLFELELVQSLAEFPVCFDFVAFEVVNLGQNSAVAEFAAEIFHNLHE EVITTAARGHSLMARVQQLEDEVPSVEKAFLSQTDHSSFFTNGVGVDWRPNLHMEQNLITRGDLPRFVMDSYEECRGPPRLFLLDKFDVAGAGACLKRYT DPSIFKIEAPTSTTMEAQREKKARKIKKKGTRWRNGETPDATPASHAKLHQLFLEERVANGHSDPARLVKLKRRQLNGSSFNMKSGKSYMEKFLKTPSPD NKAVCEASVNPSLLALTQDNYSESGLEIVKIASVSPTKQLPQDEGSHSSSPEVEDTGSEHLHDDLNGKDTDKWIVKVSDIVADCETDKSPVHNMSIGKEL AIYAAGRTDSLDEDHSDDMISEVDNYMDALTTMESEIESDNDYKSKPHGALKWVSRQAQSDVSEERPVIQPKFLNSQSYRNSSSDDGNSSLYKGGSSISY TDSLSNVAENVQSDGEVQSKVCRSTEDSVVVTSVLQSDNPSPQLGTQSRELEDATDICSEEEKIQEPELASSDSQAESPRKRKSKSLNELHRISNTGTSV PVADYSVVSLAGKPSYGTIYDKEVSPELGALDLETNENLEVSSVASSDIHCQLKPGDPSAVLSERNSVDDLEQGDPKAVPRSASGVSDHVQSTHDDSIHD MCGTKYSNDIGNILEENGFPQEVEVHSGGFPSEMTDQLATEVDNLVGDTEVTDSNDTLNKDSMQSLPESAEVGLFNDEQEADLEEMVAVSDAEDISEHTF NQNNLDALSGNSTILPERSFEYSGESGRQEPVNLNDIAPETVETKDVVESIASNVDGHANEILCPSIDVQESLSSSDDQHQGGANLSHNISSEAYLEAEA YVEVIPKGSELSMGESIFSEPGSSVQQQDNMSVVDASVGQASGFTSSQQISQCEAGTPKMSAGFRDDQINTESIHVDKGTSEMERMTMNSADLDQAASHP SFISESRTPSEKAWDQTDESCPEPDEAGSSSSNLEFLNKETVPSEHERNQDGHSMTSVINPSSQEILLPSNQDLHSTDSAGNTFGFAPNGLDTLSSTQYV SRDEMPPMPPMQWIMGKFPIGSLGNLPMQPRAADEKAEPGLDREIVESSNQCSSNNIEDSQKVPGLSMDSTGNSSQPNPLPVEFPSVADTACMQKDSHPI EEASGPVNPISMSEDVSHNDPEIKDLPSADLKRSSPDSLGDTSSLADAVMSSQDQAKLISNGIASKPDLDPKLAEHCVESTGRGPVDALEESLPMEKEQL QQNVLNSYGGTSWPPTSLALPPSYELGKANGNKLPRPRNPLIDAVAANKSKLRKAGERVQPQAGPKVEERDTLLEQIRTKSFNLKPAAATRPNMRPSMPG IHGPKTNLKVAAILEKANAIRQALAGSDEDDDDNWSDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38440		ITB1, DIS3, SCA...	IRREGULAR TRICHOME BRANCH1, S...		Lus10022757 [exp]	0	1
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10009803 [exp]	5.3	0.9299
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10038405 [exp]	10.3	0.9163
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Lus10035436 [exp]	17.3	0.9014
AT5G27970			ARM repeat superfamily protein...		Lus10004117 [exp]	17.5	0.9137
AT2G21390			Coatomer, alpha subunit (.1)		Lus10035884 [exp]	19.5	0.9113
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028092 [exp]	20.1	0.9108
AT1G02080			transcription regulators (.1.2...		Lus10024660 [exp]	22.3	0.9114
AT1G74580			Pentatricopeptide repeat (PPR)...		Lus10000909 [exp]	22.4	0.9076
AT1G22060			unknown protein		Lus10020915 [exp]	22.6	0.8662
AT1G17500			ATPase E1-E2 type family prote...		Lus10006881 [exp]	22.7	0.8863

Compare expression of checked genes

Lus10022757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.