Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08820 185 / 7e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 156 / 6e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 149 / 1e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G48910 151 / 2e-42 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 149 / 2e-41 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 149 / 2e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 147 / 2e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 149 / 3e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 146 / 2e-40 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 145 / 3e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029436 [exp] 258 / 2e-82 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040577 [exp] 154 / 5e-45 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020588 [exp] 150 / 8e-45 AT2G27610 422 / 2e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016387 [exp] 152 / 2e-43 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 154 / 7e-43 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 152 / 2e-42 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 151 / 2e-42 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000110 [exp] 145 / 2e-42 AT4G37380 413 / 9e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 151 / 4e-42 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105700 [exp] 224 / 1e-69 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 221 / 3e-68 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 159 / 8e-45 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 158 / 1e-44 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 158 / 1e-44 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G239600 [exp] 156 / 2e-44 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 155 / 7e-44 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 155 / 9e-44 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 153 / 4e-43 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G354400 [exp] 153 / 4e-43 AT5G46460 863 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022758 pacid=23178656 polypeptide=Lus10022758 locus=Lus10022758.g ID=Lus10022758.BGIv1.0 annot-version=v1.0 ATGATCCGCGGGTTAGTCTCCAACGACTGCTTCACAGACGCAATCTCATTCTACGCTTCGATGAGAAGAGAAGGATTCTCCCCTACAGGATTCACTTTCC CTTTCGTTGTCAAAGCATGCGCCAGGAGCTTGGATTTGAGTTTCGGATTGGAGCTTCATTCCCAGGTGGTGAAATTCGGATTCGTATCCTACGTGTTCGT GAACACCAGTTTGGTGAGCTTGTACGCGAAATGTGGGTTTATTGATGATGCCGACGGGGTCGTTCACGAGTTTCTCGTCGGAGACACGTCCAACCCTTTA TCGGAGACCATATATTCCAAGCTCTCCGAATTGGCCAAGGATTTGCCGGCTGCGGGGTATGTTCCTACCACGGAGTATATACTGTTTGATATAGAAGAGG AAGAGAAGGAGCATTTCCTCGGGTGCCATAGCGAAAAGCTCGCAGTTGCTTTCGGGCTAATAGCCATGGGTCCCATGGACGTGATCCGGGTGGTGAAGAA CCTCAGGATTTGTGGCGATTGCCATGAGGCTATCAAGGTGATTTCTCGAGTTACGGGTAGCGAGATAGTTGTTAGAGATACTAATCGCTTTCATTGTTTC TCTGGCGGAACATGTTCTTGTAACGATTACTGGTGA
AA sequence Show only first row Show all	>Lus10022758 pacid=23178656 polypeptide=Lus10022758 locus=Lus10022758.g ID=Lus10022758.BGIv1.0 annot-version=v1.0 MIRGLVSNDCFTDAISFYASMRREGFSPTGFTFPFVVKACARSLDLSFGLELHSQVVKFGFVSYVFVNTSLVSLYAKCGFIDDADGVVHEFLVGDTSNPL SETIYSKLSELAKDLPAAGYVPTTEYILFDIEEEEKEHFLGCHSEKLAVAFGLIAMGPMDVIRVVKNLRICGDCHEAIKVISRVTGSEIVVRDTNRFHCF SGGTCSCNDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10022758 [exp]	0	1
AT2G44830			Protein kinase superfamily pro...		Lus10028208 [exp]	6.6	0.7992
AT1G74900		OTP43	organelle transcript processin...		Lus10042307 [exp]	7.7	0.7641
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10019694 [exp]	10.6	0.7877
AT4G03415			Protein phosphatase 2C family ...		Lus10039802 [exp]	11.7	0.7825
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Lus10038276 [exp]	12.5	0.7417
AT1G52140			unknown protein		Lus10037566 [exp]	14.8	0.7428
AT3G51650			unknown protein		Lus10009100 [exp]	15.3	0.7498
AT1G05070			Protein of unknown function (D...		Lus10020038 [exp]	17.8	0.7551
AT3G06270			Protein phosphatase 2C family ...		Lus10034009 [exp]	18.7	0.7025
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10011900 [exp]	20.0	0.7280

Compare expression of checked genes

Lus10022758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.