Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02875 457 / 2e-159 ILR1 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) AT5G56660 395 / 3e-135 ILL2 IAA-leucine resistant (ILR)-like 2 (.1) AT1G51760 387 / 3e-132 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) AT5G56650 383 / 2e-130 ILL1 IAA-leucine resistant (ILR)-like 1 (.1) AT1G51780 377 / 4e-128 ILL5 IAA-leucine resistant (ILR)-like gene 5 (.1) AT5G54140 348 / 8e-117 ILL3 IAA-leucine-resistant (ILR1)-like 3 (.1) AT1G44350 347 / 7e-116 ILL6 IAA-leucine resistant (ILR)-like gene 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016998 [exp] 470 / 2e-164 AT3G02875 571 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10021321 [exp] 468 / 2e-163 AT3G02875 573 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10030659 [exp] 410 / 5e-141 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030828 [exp] 409 / 2e-140 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10037601 [exp] 406 / 2e-139 AT1G51760 649 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10010715 [exp] 399 / 2e-136 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10029200 [exp] 392 / 5e-134 AT5G56660 469 / 8e-164 IAA-leucine resistant (ILR)-like 2 (.1) Lus10032963 [exp] 388 / 3e-132 AT5G54140 545 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Lus10025668 [exp] 380 / 4e-129 AT1G44350 585 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G074100 [exp] 587 / 0 AT3G02875 508 / 1e-178 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.006G207400 [exp] 491 / 9e-173 AT3G02875 584 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.006G207300 [exp] 479 / 4e-168 AT3G02875 568 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.002G082400 [exp] 419 / 3e-144 AT1G44350 609 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.012G007400 [exp] 405 / 5e-139 AT5G54140 548 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.005G178900 [exp] 406 / 1e-138 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.010G035900 [exp] 404 / 2e-138 AT1G51760 482 / 1e-168 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.003G045200 [exp] 399 / 1e-136 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.015G004000 [exp] 392 / 1e-133 AT5G54140 520 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07687 [flax] [poplar] M20_dimer Peptidase dimerisation domain CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10022761 pacid=23178581 polypeptide=Lus10022761 locus=Lus10022761.g ID=Lus10022761.BGIv1.0 annot-version=v1.0 ATGCGACGGTTAGTTACTCTGACGTTGACGATACTGTGCACGAGCATCGCCGTTGCGGCGGCGACGGGGGGGACGGAGAGTCATCGGGAGCTGAGTTCAC TGACGCGGGAGCTGCTGGAGACGGCGAGATCGCCGGAGTTCTTCAGGTGGTTGAGAAGCGTACGGCGGAGAATCCACGAGGATCCGGAGCTGGCTTTCGA AGAGTTCAACACGAGTCGATTGGTGAGATCGGAGCTCGACTCGCTAGGGATTGAGTACACTTGGCCGGTGGCGGAGACCGGGGTGGTTGGTTCAGTTGGG TCTGGGTTAAAGCCTTGGTTCGGTCTCCGAGCCGATATGGACGCGCTGCCCATTCAGGAAATGGTGGAATGGGAACACAAGAGCAAGAACAAAGGCAAGA TGCATGCTTGTGGCCACGACGTTCACGTAACAATGCTACTTGGAGCAGCCAAGTTGCTCAAACTCAAACAAGCCGAGTTGAAGGGCACAGTGAAGCTGGT GTTCCAACCAGCAGAAGAAGGCCGAGGCGGGGCGTACCAGATGCTGAAATCGGGGGCTTTAGACGACATTCAGGCCATGTTCGGCCTCCATGTCGCTCCT GAAATGCCGGTTGGTTCGATCGGATCAAGGCCAGGCACATTCCTGGCCGGGTCCGGAAGGTTTGTGGCAACTGTCAAAGGGATAGGCGGACACGCTGCTT GGCCACATGACGGTAGAGATCCAGTTCTTGCTGCTACATTCATCGTACTTTCCCTCCAACAGATCGTCTCCCGCGAAACCGATCCTCTGCAATCTCGGGT GATCTCAGTAGGTTTCGTGGAGGCCGGCCAATCATTGAACGTGATCCCGGAGACAGTGAAATTAGGAGGCACATTTCGAAGCTCGACGAGCGAAGGACTA TTTGATCTGCAGCAGAGAATCAAGGAAGTAGTCGAAGGACAAGCAGCCGTCCACCGATGCACAGCAACACTGGACTTCATGAAAGAAACCATGAGGCCTT ATCCAGCCACCGTGAACGACGAAGCAATGTTCGAACACGCCAAGTCAGTCGGCGGAGCCCTGCTCGGAGATGGAGAATCTTCGAACGTGAAGCTCCTTCC TGTTTCAATGGGGGCAGAGGACTTCAGCTTCTACTCGCAGAAGATGAAGGCCGCGTTTTTCATGATCGGTGCCGGTGGTAGTCTACCAAGAGTGGCGGAG CCTCTGCATTCGCCTCGATTGGTCCTCGACGAGGATGTTCTTCCCCTCGGCGCTGCTCTCCACGCTGCTGTCGCCATCTCTTACCTGGACGAGTAG
AA sequence Show only first row Show all	>Lus10022761 pacid=23178581 polypeptide=Lus10022761 locus=Lus10022761.g ID=Lus10022761.BGIv1.0 annot-version=v1.0 MRRLVTLTLTILCTSIAVAAATGGTESHRELSSLTRELLETARSPEFFRWLRSVRRRIHEDPELAFEEFNTSRLVRSELDSLGIEYTWPVAETGVVGSVG SGLKPWFGLRADMDALPIQEMVEWEHKSKNKGKMHACGHDVHVTMLLGAAKLLKLKQAELKGTVKLVFQPAEEGRGGAYQMLKSGALDDIQAMFGLHVAP EMPVGSIGSRPGTFLAGSGRFVATVKGIGGHAAWPHDGRDPVLAATFIVLSLQQIVSRETDPLQSRVISVGFVEAGQSLNVIPETVKLGGTFRSSTSEGL FDLQQRIKEVVEGQAAVHRCTATLDFMKETMRPYPATVNDEAMFEHAKSVGGALLGDGESSNVKLLPVSMGAEDFSFYSQKMKAAFFMIGAGGSLPRVAE PLHSPRLVLDEDVLPLGAALHAAVAISYLDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10022761 [exp]	0	1
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10013773 [exp]	2.8	0.9102
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10002994 [exp]	13.0	0.8770
					Lus10018472 [exp]	14.0	0.8754
AT3G19910			RING/U-box superfamily protein...		Lus10010182 [exp]	14.5	0.8679
AT5G57850			D-aminoacid aminotransferase-l...		Lus10006441 [exp]	15.7	0.8870
AT4G08580			microfibrillar-associated prot...		Lus10020319 [exp]	18.0	0.8656
AT3G11810			unknown protein		Lus10036797 [exp]	20.0	0.8628
AT1G64385			unknown protein		Lus10032376 [exp]	20.2	0.8764
AT1G22540			Major facilitator superfamily ...		Lus10016932 [exp]	20.8	0.8715
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10024887 [exp]	22.8	0.8688

Compare expression of checked genes

Lus10022761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.