Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 444 / 1e-151 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 439 / 8e-150 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31950 394 / 5e-132 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT3G25180 372 / 1e-123 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT2G25160 335 / 3e-109 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT5G07990 286 / 2e-90 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37320 279 / 9e-88 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37310 274 / 1e-85 CYP81H1 "cytochrome P450, family 81, subfamily H, polypeptide 1", cytochrome P450, family 81, subfamily H, polypeptide 1 (.1) AT4G37340 263 / 9e-82 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37330 263 / 1e-81 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003147 [exp] 919 / 0 AT4G31940 421 / 7e-143 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003148 [exp] 692 / 0 AT4G31940 430 / 3e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10002357 [exp] 689 / 0 AT4G31940 432 / 2e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 586 / 0 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 582 / 0 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025901 [exp] 457 / 3e-156 AT4G31940 426 / 2e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025923 [exp] 445 / 9e-152 AT4G31970 420 / 4e-142 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10025904 [exp] 442 / 1e-150 AT4G31940 413 / 3e-139 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038178 [exp] 428 / 4e-145 AT4G31940 425 / 3e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334700 [exp] 516 / 4e-180 AT4G31970 459 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.014G037500 [exp] 473 / 4e-163 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 443 / 3e-151 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.013G125300 [exp] 419 / 4e-142 AT3G25180 522 / 0.0 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.009G108600 [exp] 418 / 5e-142 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037900 [exp] 417 / 3e-141 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.004G106600 [exp] 414 / 4e-140 AT3G25180 514 / 1e-179 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.014G037300 [exp] 411 / 4e-139 AT4G31940 629 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 410 / 4e-138 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037800 [exp] 404 / 4e-136 AT4G31940 495 / 9e-172 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10022762 pacid=23159993 polypeptide=Lus10022762 locus=Lus10022762.g ID=Lus10022762.BGIv1.0 annot-version=v1.0 ATGGATCTTGCTTCAATACTCTTCATACTCTCAGGATTCCTCTTCCTTCACTTCCTCCGAACCCTAATCTCGACCCGAACCCAGAAAGAGAAGCTTCGGC AAATACCGGAAATCCCAGGCGCTTTGCCCTTCGTCGGCCACCTCCACCTCCTCGGAGGCAAAGACACGCTGGCGAGGAAGCTGGGCGCCTTTGCTGACAA ACACGGCCCCATGTTCACCATCCGATTGGGTTCCTACCCAACCGTGATAGTGAGCGATGAGGAGTCTATGAAAGACTGCTTTGTGAAAAACGACAGGGCG CTGGCTGCTCGCCCTCCCTCCACCCAGGGCAAGATCCTGGGAAAGAACTTTGCGGTCTTCGGGTTCGCATCTTACGGAGACTATTGGCGTAACGTCAAGA AGCTCATCATAACCGAGATCCTGTCCTTGCCCAGGATCAGAGCCATGAGGCACGTTCAGGTCTCGGAGGTGGACGTCCTGGTCAAGGACTTGCACTCGCA GTGCCTTGTAGGGCCCGAGAATCGCGGTCAGGTGGTGATCAGCGACTGGCTGCAGAACTTTGTGTTGAACATCATCACGAGGATGGTCGCGGGGAGGAAG TACTTCGAGAACTTGGCGGACAGCATTGGGACCGCTGATGTGGGGGGAAGGCCGGTCGGGGAGCTCATTAGGGAGTTCATGGACGTGAATGGCTCACTCG TGTTGTCGGATTTGATCCCTAGTCTAGGGTGGATTGACATCAAGGGGATGAAGAAGTCGATGAAGAGGATCTCCAAGGAGTTGGATGTCATCATTGATGG TTGGATTGAAGAACATAAAGTGAAGAGGAGTAAATTGGGTGACAATTTGGTTGATGAAGATTTCATTGATGTCATGCTCTCTGTTATTGGTGACAACTTT GACCCCTCCGGTCAACACGACAAGGAAACCATCATCAAGTCAACCGCTATGGCTGTGATCATCGCGGCAGCTGACACGACTTCTGTAACCCTGACATGGA TGCTATCAAACCTCCTCAACAACCGACGGACCCTAACTCTCCTCCAGCAAGAAATCGACACCAAAGTCGGGAAGGACCGAATCGTACAAGACTCTGACCT CGAGAACCTCACCTACCTCCACGCGGTAATCCGCGAAACCCTCAGGATGAACCCTGCGGGACCCATCTCGGTCCCGCGAGTGGCATCGGAGGACATCACC ATTCGCGGGTACCACGTGCCTAGGGGCACGAGGTTCTTTGCGAACTTCTGGAAGCTCCACAGGAACCCAGAGATGTTCCCGGAGCCCAACGAGTTCCGAC CCGAGAGGTTCCACGACAAGGAGGTGAAGGTGGACATCTACGGGAGGGACTTCGAGTACTTGCCGTTTGGGACCGGACGGAGGTCGTGCCCCGGGATGAA CTTCGGGATGGAAGTTGTGCAGTTGACGGCGGCGAGGTTGTTGCAGGCTTTTGACTTTGGGACGCCGTTTGACTTGCCGGTGGACATGACGGAGGCGGAT AGTACGACGTTGGCTAAGGACAAGCCGTTGGAAGTTGTGCTTAGGCCACGACTTTCGCCTGAGCTCTATACTACTACTATGGCTTAA
AA sequence Show only first row Show all	>Lus10022762 pacid=23159993 polypeptide=Lus10022762 locus=Lus10022762.g ID=Lus10022762.BGIv1.0 annot-version=v1.0 MDLASILFILSGFLFLHFLRTLISTRTQKEKLRQIPEIPGALPFVGHLHLLGGKDTLARKLGAFADKHGPMFTIRLGSYPTVIVSDEESMKDCFVKNDRA LAARPPSTQGKILGKNFAVFGFASYGDYWRNVKKLIITEILSLPRIRAMRHVQVSEVDVLVKDLHSQCLVGPENRGQVVISDWLQNFVLNIITRMVAGRK YFENLADSIGTADVGGRPVGELIREFMDVNGSLVLSDLIPSLGWIDIKGMKKSMKRISKELDVIIDGWIEEHKVKRSKLGDNLVDEDFIDVMLSVIGDNF DPSGQHDKETIIKSTAMAVIIAAADTTSVTLTWMLSNLLNNRRTLTLLQQEIDTKVGKDRIVQDSDLENLTYLHAVIRETLRMNPAGPISVPRVASEDIT IRGYHVPRGTRFFANFWKLHRNPEMFPEPNEFRPERFHDKEVKVDIYGRDFEYLPFGTGRRSCPGMNFGMEVVQLTAARLLQAFDFGTPFDLPVDMTEAD STTLAKDKPLEVVLRPRLSPELYTTTMA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10022762 [exp]	0	1
AT4G37290			unknown protein		Lus10019310 [exp]	1.4	0.9974
AT5G37490			ARM repeat superfamily protein...		Lus10001079 [exp]	2.4	0.9971
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028377 [exp]	2.4	0.9970
AT1G35210			unknown protein		Lus10010343 [exp]	2.6	0.9957
AT1G14550			Peroxidase superfamily protein...		Lus10009902 [exp]	3.0	0.9953
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10030806 [exp]	3.2	0.9960
AT4G37290			unknown protein		Lus10010255 [exp]	4.5	0.9962
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10019060 [exp]	4.7	0.9900
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041973 [exp]	4.9	0.9960
AT1G03220			Eukaryotic aspartyl protease f...		Lus10010278 [exp]	6.3	0.9954

Compare expression of checked genes

Lus10022762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.