Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25160 355 / 8e-125 ER lumen protein retaining receptor family protein (.1) AT1G19970 307 / 7e-106 ER lumen protein retaining receptor family protein (.1) AT1G75760 307 / 9e-106 ER lumen protein retaining receptor family protein (.1) AT4G38790 306 / 4e-105 ER lumen protein retaining receptor family protein (.1) AT2G21190 301 / 2e-103 ER lumen protein retaining receptor family protein (.1) AT3G25040 102 / 1e-26 ERD2B endoplasmic reticulum retention defective 2B (.1) AT1G29330 99 / 3e-25 ATERD2, AERD2, ERD2 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003146 [exp] 498 / 0 AT3G25160 388 / 2e-137 ER lumen protein retaining receptor family protein (.1) Lus10038198 [exp] 381 / 9e-135 AT3G25160 362 / 4e-127 ER lumen protein retaining receptor family protein (.1) Lus10025906 [exp] 360 / 2e-120 AT3G25150 363 / 4e-118 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10017213 [exp] 302 / 1e-103 AT1G75760 481 / 5e-174 ER lumen protein retaining receptor family protein (.1) Lus10026285 [exp] 300 / 4e-103 AT4G38790 473 / 7e-171 ER lumen protein retaining receptor family protein (.1) Lus10021097 [exp] 298 / 4e-102 AT1G75760 475 / 8e-172 ER lumen protein retaining receptor family protein (.1) Lus10007570 [exp] 295 / 6e-101 AT4G38790 466 / 2e-168 ER lumen protein retaining receptor family protein (.1) Lus10012176 [exp] 260 / 8e-87 AT2G21190 397 / 2e-140 ER lumen protein retaining receptor family protein (.1) Lus10042389 [exp] 209 / 9e-68 AT2G21190 355 / 5e-125 ER lumen protein retaining receptor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G246700 [exp] 357 / 3e-125 AT3G25160 400 / 5e-142 ER lumen protein retaining receptor family protein (.1) Potri.009G128900 [exp] 309 / 1e-106 AT2G21190 476 / 2e-172 ER lumen protein retaining receptor family protein (.1) Potri.004G167400 [exp] 309 / 2e-106 AT4G38790 472 / 1e-170 ER lumen protein retaining receptor family protein (.1) Potri.002G022300 [exp] 303 / 3e-104 AT1G75760 464 / 2e-167 ER lumen protein retaining receptor family protein (.1) Potri.017G056000 [exp] 114 / 7e-31 AT3G25040 383 / 3e-137 endoplasmic reticulum retention defective 2B (.1) Potri.001G315800 [exp] 112 / 3e-30 AT3G25040 355 / 3e-126 endoplasmic reticulum retention defective 2B (.1) Potri.011G071200 [exp] 79 / 1e-17 AT1G29330 341 / 1e-120 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF00810 [flax] [poplar] ER_lumen_recept ER lumen protein retaining receptor
Representative CDS sequence Show only first row Show all	>Lus10022763 pacid=23159894 polypeptide=Lus10022763 locus=Lus10022763.g ID=Lus10022763.BGIv1.0 annot-version=v1.0 ATGGGTTCGAAGAGGAACGCTATGGGGGGCGGAGGGTCGTCGCCGCCGGCGGTGAAGGCGGTGGTTAAGCTCTGTGTTAGGAATCACAACCATTTCTTCA TCGCCTCTGAGGCCATTCACGCCGCCGGGATCATCGTCCTTGCATACAAGCTCATCACCCAGAAAACCTGCTCAGGGCTTTCACTGAGGAGTCAGGAGCT GACAGCATTGTTCCTAGCGGTGAGGCTGTGTTGCAGCGTGTTCATGGAGGCGGACATCCACACCATGCTCGATTTCGCCACCCTCGCTCTGACCCTGTGG GTCATCTACATGATGAGGTTCAAGTTGAAGTCCTCCTACATCAAGGAGCTCGACAACTTGAACGTCATCTATCTGGTTGTCCCTTGTCTTGCCCTTGCCT TTATAGTCAAGCCACATACCTTATACGGCTTGGTAAGCGAATTCCTCTGGGCGTTTTGCGCCTACCTCGAAGCTGTCTCTGTCCTGCCCCAGCTGCGAAT GATGCAGAACGCCAAGATGATCGAGCCGTTCACGTCTCGCTACGTATTCGCGCTGGGGGTGGCTAGATTCCTGTCCTGTGCACATTGGATCATCAGGGTG ATCGAGACTCGTGGGGCGTACCTGTACATAACGGGGAGCGGGTACTTCTGGTTCCCGGTGGCGTTCCTGGCGGAGATGGTCCAGACGTTCATCTTGGCTG ATTTCTGCTACTATTACGTTAAGAGTTTCATGGCAGGGCAGCTTGTGATGAGGATGCCTGTTTAG
AA sequence Show only first row Show all	>Lus10022763 pacid=23159894 polypeptide=Lus10022763 locus=Lus10022763.g ID=Lus10022763.BGIv1.0 annot-version=v1.0 MGSKRNAMGGGGSSPPAVKAVVKLCVRNHNHFFIASEAIHAAGIIVLAYKLITQKTCSGLSLRSQELTALFLAVRLCCSVFMEADIHTMLDFATLALTLW VIYMMRFKLKSSYIKELDNLNVIYLVVPCLALAFIVKPHTLYGLVSEFLWAFCAYLEAVSVLPQLRMMQNAKMIEPFTSRYVFALGVARFLSCAHWIIRV IETRGAYLYITGSGYFWFPVAFLAEMVQTFILADFCYYYVKSFMAGQLVMRMPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25160			ER lumen protein retaining rec...		Lus10022763 [exp]	0	1
AT2G38640			Protein of unknown function (D...		Lus10010681 [exp]	2.2	0.9248
AT3G11260	HD	WOX5B, WOX5	WUSCHEL related homeobox 5B, W...		Lus10040219 [exp]	4.9	0.9094
AT5G53110			RING/U-box superfamily protein...		Lus10023086 [exp]	11.7	0.9179
AT4G00755			F-box family protein (.1.2)		Lus10015001 [exp]	12.1	0.9214
AT3G25570			Adenosylmethionine decarboxyla...		Lus10031919 [exp]	14.7	0.8983
AT5G47720			Thiolase family protein (.1.2....		Lus10038749 [exp]	18.1	0.9147
AT3G58190	AS2	LBD29, ASL16	ASYMMETRIC LEAVES 2-LIKE 16, l...		Lus10033873 [exp]	18.8	0.8777
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Lus10018667 [exp]	19.2	0.9054
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10029495 [exp]	19.8	0.9094
AT1G11050			Protein kinase superfamily pro...		Lus10028551 [exp]	20.8	0.8899

Compare expression of checked genes

Lus10022763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.