Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29575 112 / 3e-29 AFP3 ABI five binding protein 3 (.1.3.4) AT3G07250 114 / 1e-27 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT1G13740 100 / 5e-24 AFP2 ABI five binding protein 2 (.1) AT1G69260 97 / 9e-23 AFP1 ABI five binding protein (.1) AT3G02140 83 / 1e-17 AFP4, TMAC2 TWO OR MORE ABRES-CONTAINING GENE 2, ABI FIVE BINDING PROTEIN 4, AFP2 (ABI five-binding protein 2) family protein (.1) AT4G28910 69 / 1e-12 NINJA novel interactor of JAZ (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003145 [exp] 442 / 2e-156 AT3G29575 112 / 4e-29 ABI five binding protein 3 (.1.3.4) Lus10036898 [exp] 107 / 7e-27 AT1G69260 200 / 2e-62 ABI five binding protein (.1) Lus10037084 [exp] 106 / 1e-26 AT1G13740 197 / 2e-61 ABI five binding protein 2 (.1) Lus10004645 [exp] 102 / 1e-24 AT1G13740 233 / 2e-74 ABI five binding protein 2 (.1) Lus10026667 [exp] 102 / 2e-24 AT1G13740 237 / 5e-76 ABI five binding protein 2 (.1) Lus10043236 [exp] 67 / 6e-12 AT4G28910 265 / 9e-84 novel interactor of JAZ (.1.2.3) Lus10011116 [exp] 65 / 2e-11 AT4G28910 259 / 1e-81 novel interactor of JAZ (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G157900 [exp] 110 / 1e-27 AT1G13740 229 / 1e-72 ABI five binding protein 2 (.1) Potri.008G096500 [exp] 105 / 1e-25 AT1G13740 240 / 6e-77 ABI five binding protein 2 (.1) Potri.017G094500 [exp] 102 / 2e-24 AT1G13740 169 / 1e-49 ABI five binding protein 2 (.1) Potri.004G120600 [exp] 96 / 6e-22 AT1G13740 176 / 5e-52 ABI five binding protein 2 (.1) Potri.006G162900 [exp] 66 / 1e-11 AT4G28910 307 / 1e-99 novel interactor of JAZ (.1.2.3) Potri.018G085100 [exp] 63 / 8e-11 AT4G28910 324 / 3e-106 novel interactor of JAZ (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07897 [flax] [poplar] EAR Ethylene-responsive binding factor-associated repression
Representative CDS sequence Show only first row Show all	>Lus10022764 pacid=23159924 polypeptide=Lus10022764 locus=Lus10022764.g ID=Lus10022764.BGIv1.0 annot-version=v1.0 ATGGCGATGATCGAGGAGGAACCGATTGAGCTGGAGCTGGGCCTTTCTCTCGGCGGGAATTACGGTACTACCCGCCGTACTATGCTCCAGAAATCCGGAC CCGGGTCAGCCGATTTGGGATCTGGTGGAGCTTCGTCGGGGTTTTCCGGCCCTGAGGATTTGAAGAACAAGCGGGAGGTTAATGCGTTGAGGAGACTGGA GGCTAGGAAGAAGAGGGATGAGAAGCAGCTGAAGAGAGCTTTTTCCAAGGGGAAACTCGCCGCCGCCGCCGGCTCTCCGGCGAGTTTCGCAGGTTATTTG AACAACGGAGGAGAGGAGCCGGAATATAAGAAGAGCAAGATTGGAATTGGGAGGTCGGATTCGGGTCCGGGTCCCAACCCGGATGATCTGCAGCTGGGGT TTGGGCAAAACGGTGTAACAGCGCCGTCATGGTTTGCCGCCGCCGTCGGCGGGACGGAGAGGAACGTGATTCGGCCGGTGGCGAGGTTTGGGTTCAGGGG TTCGTTTGGGAATGATTCGGAGCAGAATGGAGGCGCGGTGGTCCGGTCGAATGGGTCGCCCGTTTGTTCCTCCGGTTCGGATAACCGGAGTTCTTCTCGT GAAGGTGGTGGGAGCATTGATAGCAGAATCAATTCAATACAGTCAATCACAGTCCTCGAACAGTCGATTACTACATTCACAAAGGAAGAATCCAAGTCAG ACAACGAAGGGACGAACAACACATCAAGCATCGAGAATCCAGACGGGCCCACCGGATCGAAGGAAATCAATCAAGGCAAACTGGTCCCTTCCAAGAACCA GAATCAGAACCCTGGTGCTGCATTGCCATACATGCCCTGCGTTTCGACAACAGGGAACGGTCCGAATGGGAAGACGGTACACGGGTTTCTGTACCGGTAC GCGAAAGGGGAAGAGGCAAGCATCGTTTGTGCCTGCCATGGAAGCTCGTTCTCGCCTGCGGAGTTCGTGCAGCATGCTGGAGGTGTCGATGTCTCGAATC CTCTGAGGCATATAACAGTTGTTCCATCTGCATTTTGA
AA sequence Show only first row Show all	>Lus10022764 pacid=23159924 polypeptide=Lus10022764 locus=Lus10022764.g ID=Lus10022764.BGIv1.0 annot-version=v1.0 MAMIEEEPIELELGLSLGGNYGTTRRTMLQKSGPGSADLGSGGASSGFSGPEDLKNKREVNALRRLEARKKRDEKQLKRAFSKGKLAAAAGSPASFAGYL NNGGEEPEYKKSKIGIGRSDSGPGPNPDDLQLGFGQNGVTAPSWFAAAVGGTERNVIRPVARFGFRGSFGNDSEQNGGAVVRSNGSPVCSSGSDNRSSSR EGGGSIDSRINSIQSITVLEQSITTFTKEESKSDNEGTNNTSSIENPDGPTGSKEINQGKLVPSKNQNQNPGAALPYMPCVSTTGNGPNGKTVHGFLYRY AKGEEASIVCACHGSSFSPAEFVQHAGGVDVSNPLRHITVVPSAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29575		AFP3	ABI five binding protein 3 (.1...		Lus10022764 [exp]	0	1
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10038514 [exp]	4.8	0.7816
AT3G01180		ATSS2	starch synthase 2 (.1)		Lus10033014 [exp]	13.2	0.7126
AT1G16850			unknown protein		Lus10035730 [exp]	29.1	0.6910
AT5G19290			alpha/beta-Hydrolases superfam...		Lus10036530 [exp]	36.9	0.6756
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10038480 [exp]	42.6	0.7118
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014327 [exp]	44.5	0.7033
AT3G27470			Protein of unknown function (D...		Lus10022287 [exp]	44.6	0.6879
AT5G57710			Double Clp-N motif-containing ...		Lus10008902 [exp]	49.6	0.6263
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10018758 [exp]	50.8	0.6906
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10042017 [exp]	52.0	0.6530

Compare expression of checked genes

Lus10022764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.