Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25150 370 / 9e-124 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT5G60980 267 / 4e-84 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT5G48650 236 / 2e-72 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT1G13730 195 / 4e-57 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT1G69250 174 / 2e-49 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT5G43960 169 / 5e-47 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT2G03640 168 / 8e-47 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain AT3G07250 140 / 3e-35 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT3G55540 73 / 7e-14 nuclear transport factor 2 (NTF2) family protein (.1) AT1G27310 52 / 3e-08 NTF2A nuclear transport factor 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003144 [exp] 685 / 0 AT3G25150 385 / 2e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10025906 [exp] 511 / 8e-176 AT3G25150 363 / 4e-118 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10037066 [exp] 214 / 1e-63 AT2G03640 248 / 2e-77 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10036918 [exp] 211 / 1e-62 AT2G03640 250 / 4e-78 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10026668 [exp] 204 / 1e-59 AT2G03640 255 / 5e-80 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10022873 [exp] 186 / 3e-53 AT5G43960 377 / 1e-127 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10004644 [exp] 145 / 4e-38 AT2G03640 253 / 2e-79 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10014469 [exp] 133 / 2e-34 AT5G43960 156 / 4e-43 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10023722 [exp] 131 / 7e-33 AT5G43960 266 / 2e-83 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G246600 [exp] 437 / 1e-149 AT3G25150 374 / 8e-125 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.015G058700 [exp] 281 / 5e-89 AT5G60980 382 / 9e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.017G094600 [exp] 266 / 5e-84 AT5G60980 286 / 6e-92 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.008G096700 [exp] 201 / 6e-59 AT2G03640 219 / 3e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Potri.002G257000 [exp] 180 / 5e-51 AT5G43960 402 / 3e-137 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.014G192900 [exp] 175 / 4e-49 AT5G43960 392 / 3e-133 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.010G065500 [exp] 163 / 1e-44 AT5G43960 310 / 3e-101 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.010G157800 [exp] 138 / 2e-35 AT1G13730 219 / 4e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) Potri.011G025500 [exp] 58 / 6e-10 AT1G11570 171 / 5e-56 NTF2-like (.1.2) Potri.003G170800 [exp] 52 / 3e-08 AT1G27970 230 / 1e-79 nuclear transport factor 2B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0051 [flax] [poplar] NTF2 PF02136 [flax] [poplar] NTF2 Nuclear transport factor 2 (NTF2) domain
Representative CDS sequence Show only first row Show all	>Lus10022765 pacid=23159943 polypeptide=Lus10022765 locus=Lus10022765.g ID=Lus10022765.BGIv1.0 annot-version=v1.0 ATGGCCGAACTCGTGCAGCAGCCTGTGACTCCTCCTGCTGATGTTGTTGGCAATGCGTTTGTTCATCAATATTACCACATCTTGCGCCAGTCTCCGGAGC TTGTCCATCGATTTTACCAGGAGAATAGTAAGCTTGGCCGCCCTGAAGGGAACGGTATCATGAGTACCACCACTACGATGCTTGCCATTAACGAGAAGAT ACTCGCACTGGTTCATGGAGATTTCAAGGTTGAAATTCTTACAGTGGACTCGCAAGAATCTTATGAGGGTGGAGTCCTTGTTCTCGTGACAGGATATCTG ACCAGAAATGAGGACGTCCGTGAGAAATTTACTCAGAGTTTCTTCTTGGCTCCTCAAGAAAATGGCTATTTCGTCTTGAATGATGTATTCCGATATGTGG ATGAAGTGAAGGTTCAAAATGGAAACCCAGATACAGTCAATGATATGAAAGCTCCAACTACTGCTGAAGAGGATTCTTCGCTTGTTACGGAAAACCACGT TCCTGAGGCAGTGGCCACTTTATCCGAGGAAGTCAATGAAGTTGAAGTTCATGACACATCTGGCAATGGAGATGCTCCAGTTGAAGAGGAGGAAGTACCA GTGCCTGAAGTTATTGATGCAGCTCCTGAAGAGTCGGAAAGGGAAATTGATACACAAGTGGTCTCTGAATCGGACACAAAGATTGGGGATGCACCCAAGA AGTCATATGCTTCCATTGTGAAAGTCATGAAGGAGAATGCTGCACCATTCTCAACACCGGCCGCTTCTCCACTGAGATCAGTGTCAAGGAATCAAGAACA ATTGTCTGCCTCAGCACCTCCACCTCAAGTATCTGAACCACATGCCTTGAACTCGAATGAGATTGAAAACCAGAGTACCCAAGATACCGAAGCCGTATCT GAGGGACCTTCTATCTACCTGAAAGGGTTGCCTTTTGATGCCACCTCTGCCTTGCTTGAGAACGAGTTCAAGAAGTTCGGGACTATTAGGGCTGGCGGTA TTCAAATCAGGAACCAAAAGGGATTTTGCTTTGGATTTGTGGAATTTGAGGCTGCCAGTGCGGTGCAAAGTGCAATAGAGGCTTCACCTGTCATGATTCA TGGGTGGCGAGTTGTAGTCGAGGAAAAGAGATCTACGTTTCGAGGAAACAGTAGGGGGCGCTCTTCTGCAGGATCCGGGAGCGGATACAGAAACGAGGGA GTTAGAGGCCGCGGAGGCTATGGAGGAGGAAGATCTTATGGCCGAGGCGGTGGCAGCGATCACGGTAGCAGGAATGTGAGTCGTGGCGGCGGATTCTCAA ACCGCGGTGGCGAAGGTTTTCGTAGGTCCGACAAGACAACCAATAACAACGGTGGTGGGCGCACCAGCCCTCCCGGGGGGCCCGCCCTGAAAGGCGACAG GGGGAACGCGCCCGCACGGGGAGGCACCGCGCCGCATGTGTCTGCTACAGCTTGA
AA sequence Show only first row Show all	>Lus10022765 pacid=23159943 polypeptide=Lus10022765 locus=Lus10022765.g ID=Lus10022765.BGIv1.0 annot-version=v1.0 MAELVQQPVTPPADVVGNAFVHQYYHILRQSPELVHRFYQENSKLGRPEGNGIMSTTTTMLAINEKILALVHGDFKVEILTVDSQESYEGGVLVLVTGYL TRNEDVREKFTQSFFLAPQENGYFVLNDVFRYVDEVKVQNGNPDTVNDMKAPTTAEEDSSLVTENHVPEAVATLSEEVNEVEVHDTSGNGDAPVEEEEVP VPEVIDAAPEESEREIDTQVVSESDTKIGDAPKKSYASIVKVMKENAAPFSTPAASPLRSVSRNQEQLSASAPPPQVSEPHALNSNEIENQSTQDTEAVS EGPSIYLKGLPFDATSALLENEFKKFGTIRAGGIQIRNQKGFCFGFVEFEAASAVQSAIEASPVMIHGWRVVVEEKRSTFRGNSRGRSSAGSGSGYRNEG VRGRGGYGGGRSYGRGGGSDHGSRNVSRGGGFSNRGGEGFRRSDKTTNNNGGGRTSPPGGPALKGDRGNAPARGGTAPHVSATA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25150			Nuclear transport factor 2 (NT...		Lus10022765 [exp]	0	1
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10030171 [exp]	2.0	0.9550
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10041728 [exp]	2.8	0.9477
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10035211 [exp]	2.8	0.9584
AT1G19990			unknown protein		Lus10033141 [exp]	3.2	0.9461
AT3G21350		MED6	RNA polymerase transcriptional...		Lus10022814 [exp]	3.7	0.9482
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10034199 [exp]	3.9	0.9364
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Lus10003487 [exp]	4.5	0.9294
AT3G16980		NRPE9A, NRPD9A,...	RNA polymerases M/15 Kd subuni...		Lus10016880 [exp]	5.9	0.9169
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005074 [exp]	6.0	0.9340
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10011067 [exp]	6.5	0.9151

Compare expression of checked genes

Lus10022765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.