Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25140 567 / 0 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G02350 472 / 4e-166 GAUT9 galacturonosyltransferase 9 (.1) AT3G61130 385 / 1e-130 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT5G47780 369 / 4e-125 GAUT4 galacturonosyltransferase 4 (.1) AT4G38270 368 / 7e-124 GAUT3 galacturonosyltransferase 3 (.1.2) AT1G18580 341 / 5e-115 GAUT11 galacturonosyltransferase 11 (.1) AT2G20810 317 / 8e-106 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT2G46480 292 / 5e-96 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G01040 288 / 3e-94 GAUT13 galacturonosyltransferase 13 (.1.2) AT5G15470 282 / 5e-92 GAUT14 galacturonosyltransferase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011834 [exp] 602 / 0 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10003045 [exp] 451 / 1e-157 AT3G02350 827 / 0.0 galacturonosyltransferase 9 (.1) Lus10009311 [exp] 383 / 7e-130 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10041389 [exp] 382 / 1e-129 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 383 / 2e-128 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10038739 [exp] 365 / 9e-123 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10018554 [exp] 351 / 1e-118 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1) Lus10026546 [exp] 360 / 8e-117 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013506 [exp] 331 / 7e-111 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G246500 [exp] 578 / 0 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.004G111000 [exp] 507 / 7e-180 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1) Potri.017G106800 [exp] 505 / 3e-179 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1) Potri.008G010000 [exp] 472 / 2e-164 AT3G25140 671 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.014G073800 [exp] 382 / 3e-129 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.002G151400 [exp] 382 / 3e-129 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 372 / 2e-125 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.006G001100 [exp] 358 / 7e-121 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.016G001700 [exp] 360 / 8e-121 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.015G060800 [exp] 337 / 1e-113 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10022766 pacid=23160048 polypeptide=Lus10022766 locus=Lus10022766.g ID=Lus10022766.BGIv1.0 annot-version=v1.0 ATGCATGTTTTTCATGTGGTGACCGATAAGATGAATCTTGGTGCGATGCAGGTTATGTTTAAGCTGAAGGATTACAATGGCGCTCACATAGAAGTCAAAG CTGTCGAGGATTATAAGTTCTTGAACTCTTCTTATGTCCCAGTGCTCAAGCAGCTCGAGTCTGCAAATTTGCAGAGGTTTTACTTTGAGAATAAGCTCGA GAATGCTACCAAGGATACTACAAACATGAAGTTTAGGAACCCCAAGTATCTGTCCATCTTGAATCATCTGAGATTCTATCTGCCAGAAATGTACCCGAAG CTGCATAGGATACTGTTCTTGGACGATGATATAGTCGTGCAGAAGGATTTGACAGGGTTGTGGAAGATCGATATGGACGGAAAAGTCATTGGCGCTGTGG AGACTTGTTTCGGGTCGTTCCATCGTTATGCTCAGTACATGAACTTTTCACACCCTTTGATCAAAGCAAAGTTCAACCCTAAAGCCTGCGCTTGGGCTTA CGGGATGAACTTCTTCGATCTCGATGCTTGGAGGAGGGAGAAGTGCACGGAGGAATACCATTACTGGCAGACTCTTAACGAGAACCGGACATTGTGGAAG CTAGGAACGCTAACGCCAGGGTTGATCACATACTACTCGACGACGAAGCCACTCGACAAGTCATGGCACGTGCTGGGACTCGGGTACAACCCGAGCATCA GCATGGACGAGATCAGGAACGCTGCGGTTGTCCACTTCAACGGGAACATGAAGCCGTGGCTCGATATAGCCATGACCAAGTTCAAACCGCTGTGGACCAA ATACGTAGACTACGAACTGGAGTTCGTACAGCAATGCAACTTGGGTGCCTAA
AA sequence Show only first row Show all	>Lus10022766 pacid=23160048 polypeptide=Lus10022766 locus=Lus10022766.g ID=Lus10022766.BGIv1.0 annot-version=v1.0 MHVFHVVTDKMNLGAMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLKQLESANLQRFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPK LHRILFLDDDIVVQKDLTGLWKIDMDGKVIGAVETCFGSFHRYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQTLNENRTLWK LGTLTPGLITYYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIAMTKFKPLWTKYVDYELEFVQQCNLGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10022766 [exp]	0	1
AT5G05480			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017437 [exp]	2.0	0.8513
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10011834 [exp]	2.0	0.8949
AT4G09810			Nucleotide-sugar transporter f...		Lus10005790 [exp]	4.6	0.8252
AT4G34215			Domain of unknown function (DU...		Lus10014097 [exp]	4.9	0.8251
AT3G25130			unknown protein		Lus10011835 [exp]	11.0	0.8027
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10017417 [exp]	12.4	0.8048
AT2G45600			alpha/beta-Hydrolases superfam...		Lus10009308 [exp]	14.0	0.7805
AT5G64660		ATCMPG2	"CYS, MET, PRO, and GLY protei...		Lus10005810 [exp]	16.1	0.7602
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10037877 [exp]	16.5	0.8102
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10010219 [exp]	16.7	0.7357

Compare expression of checked genes

Lus10022766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.