Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25140 241 / 4e-77 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G02350 160 / 2e-46 GAUT9 galacturonosyltransferase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011834 [exp] 363 / 1e-124 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10003045 [exp] 153 / 1e-43 AT3G02350 827 / 0.0 galacturonosyltransferase 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G246500 [exp] 250 / 2e-80 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.004G111000 [exp] 171 / 3e-50 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1) Potri.017G106800 [exp] 155 / 3e-44 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1) Potri.008G010000 [exp] 118 / 9e-31 AT3G25140 671 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022767 pacid=23159980 polypeptide=Lus10022767 locus=Lus10022767.g ID=Lus10022767.BGIv1.0 annot-version=v1.0 ATGGCGAATCACCGTGCCCTGCGTCCACCGCCGGGAGGATTCGCTCCTCGCGCCTTCCGGTTGCTCGCTTCCGCCATCGCCGTCGCCGCCCTCCTCTTCT TCGCTTCCTCCTTCCTCTTCACTCCCAACTCCTCCACTTCCGACCTCCCTCACCGCTTTGGTTTGAGGAGTGATTCATACGAATTCGGATCCGGTAGGAG ATCCGTGTTGGCATTGAAATCCGATCCGTTGAAGCCACGATTGGATCAGATCCGGAAACAAGCGGATGATCACCGGACTTTGGCTCTGGCTTATGCTTCA TACGCAAGGAAGTTGAAGCTGGAGAATTCAAAGCTTCTGAGGATCTTCGCCGATTTATCAAGGAACTACACTGATCTGCTTCACAAGCCTCCGTACAGTG CTCTGTTCGAATCGAATTCCGCATCTGTTATCGAGGAATCTACGTTGAGGCAGTTTGAGAAGGAAGTCAAGGAGCGGATCAAAGTCACCCGACAAGTGAT CTCCGAGGCGAAAGAGAGTTTCGACAACCAGCTGAAGATTCAGAAGCTGAAAGACATCATCTTTGCTGTTAACGAGCAGCTGACCAAGTCCAAGAAGCAA GGCGCGTTTTCGAGCTTGATTGCTGGGTGA
AA sequence Show only first row Show all	>Lus10022767 pacid=23159980 polypeptide=Lus10022767 locus=Lus10022767.g ID=Lus10022767.BGIv1.0 annot-version=v1.0 MANHRALRPPPGGFAPRAFRLLASAIAVAALLFFASSFLFTPNSSTSDLPHRFGLRSDSYEFGSGRRSVLALKSDPLKPRLDQIRKQADDHRTLALAYAS YARKLKLENSKLLRIFADLSRNYTDLLHKPPYSALFESNSASVIEESTLRQFEKEVKERIKVTRQVISEAKESFDNQLKIQKLKDIIFAVNEQLTKSKKQ GAFSSLIAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10022767 [exp]	0	1
AT3G62720		ATXT1, XXT1	XYG XYLOSYLTRANSFERASE 1, xylo...		Lus10037521 [exp]	1.0	0.9250
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10035439 [exp]	2.0	0.8768
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10011834 [exp]	2.4	0.9196
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10011815 [exp]	7.9	0.8777
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10019414 [exp]	8.9	0.8593
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10015463 [exp]	9.5	0.8722
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10021177 [exp]	10.4	0.8735
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003525 [exp]	11.0	0.8764
AT3G25130			unknown protein		Lus10011835 [exp]	11.2	0.8188
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002939 [exp]	11.2	0.8585

Compare expression of checked genes

Lus10022767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.