Plant FIBer expression Database

Lus10022771 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27860 153 / 3e-40 vacuolar iron transporter (VIT) family protein (.1), vacuolar iron transporter (VIT) family protein (.2)
AT4G27870 154 / 4e-40 Vacuolar iron transporter (VIT) family protein (.1)
AT5G24290 149 / 4e-39 Vacuolar iron transporter (VIT) family protein (.1), Vacuolar iron transporter (VIT) family protein (.2)
AT4G27850 43 / 0.0005 Glycine-rich protein family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011838
[exp]
800 / 0 AT4G27870 161 / 9e-42 Vacuolar iron transporter (VIT) family protein (.1)
Lus10035731
[exp]
120 / 9e-29 AT4G27870 136 / 2e-33 Vacuolar iron transporter (VIT) family protein (.1)
Lus10037315
[exp]
112 / 3e-26 AT4G27870 135 / 2e-33 Vacuolar iron transporter (VIT) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G127900
[exp]
272 / 1e-84 AT4G27870 182 / 2e-49 Vacuolar iron transporter (VIT) family protein (.1)
Potri.012G004000
[exp]
209 / 1e-58 AT4G27870 126 / 1e-29 Vacuolar iron transporter (VIT) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01988 VIT1 VIT family
Representative CDS sequence
>Lus10022771 pacid=23159926 polypeptide=Lus10022771 locus=Lus10022771.g ID=Lus10022771.BGIv1.0 annot-version=v1.0
ATGACAGTGATCTATTCTTCCACAGACACCATTCAATCCAATAATGGTTCATCTGAGCCTGTCAGTGACACAAATAGCTACACCATAACAACCACCGTAT
CCAAGACTGTAATTCTTCCAACCAAACTTGTGGAGAAGCAGAACAAAGAGGTTGTTGTTGCTGCAACTTCCTCTTCAGTCAGACAGGAGGAGACAGAAGT
GGTGCTGGAGAGTGTGTATCAGAAGGCTGCAACTCAAGAGTTCTTCTGTCCTAACTGCCAGTCTTGCATCCAGAAGGTCGTTCTTCGTGACCGGCCTGTT
CCTTCTCGTCCACAGCATACCTTCAGATGTGCAGACTGCTTTGCTTTCCTCATTCCTGTAGGGAACTGGATCTTTGGTAGTAGGGGACAGGATGATGATT
ATGACATTATAACTGATCAAGTTGATACCGGTGTTCCGCAAGGAACACAACCACCACCTACGGGCTCATCAGCGAACAAAGCTCCCTCGACCGAGGTGGT
TCCTGATCAAGGGAAAGCTCCTCCGTCTGCTGTACCTTCACCAGCATTACCTGATCATGGTAAAGCTCCAACCAATGGATCAACAACATCTGAGTCAAAG
CCAGTTCATTCAGAGGTAGCAGCAGGACAGGAAGCAAATGGTCATGTTTCAGTTACAAGTAGAGATCCATCAGTTACTTGGAATTCTGAAAGCTCAGGCA
ACAAAGAGCCACGGCAGCCTGGAAAAGACTCTGACAATGTTGAAGTTGTGATTGATGGAGGGAAACCTTCAGTTGATGTAACAGAAGACAAGCGCAGAGG
TGAGACACCGGCACCGGTTCCTGGAACCTCGGAGGTTACTGTTGTAACATCTCAACCGGCTACGATCAGACCACCAAGAGTAGCTTGGGAGTGGGACATC
TTGAAGAGCATTGTCTATGGTGGTTTGGCTGAGTTGATCACCACTCTCAGCATTGTCACATCTGCTGCTAGTGCCGACACCGAGACTTTGAAAATCTTGG
CCATTGGAGTAGCCAACCTCATTGGCGGCCTTTTCATCCTCACAACCAATATTTGGGACCTAAGGTGCGAGCAGCCAAGGAAACTCGTTGTGACCTCGAT
CGAAACACAGTCAGAATCAGAAGAAGTCGACAGGTACTGCGACAACCTAGGCAAGAGGACCAACTTCAAGCGCCACACGTTCTTCGCGGTGCTGTCATTC
CTCGGATTCGGCCTTGTGCCACCTGTTGTCTACGGATTCTCGTTCAAGGAGAGTGACGACAGAGACTACAAAATTGCAGCAACCGCTGCAGCATCGCTCG
TCTGTGTGTTCCTGCTCGCCATCGGGAAGGCTCATGCTCAAAAGCCGCCAAAGACTTACTTGAAGTCTGTGGCTTTCTATGTCACGGCCGGAGTCATGGC
CTCGGGCGTCTCTTTCCTGGCGGGCGAGCTTTTCAAGAAGGTTATGGACGATCTTGGCACGTTCGCTCCGGTTGCAGAAGCTCCCCCTGCTTCTCCAGTG
CTTGGTAATTGGGCATCATACTAA
AA sequence
>Lus10022771 pacid=23159926 polypeptide=Lus10022771 locus=Lus10022771.g ID=Lus10022771.BGIv1.0 annot-version=v1.0
MTVIYSSTDTIQSNNGSSEPVSDTNSYTITTTVSKTVILPTKLVEKQNKEVVVAATSSSVRQEETEVVLESVYQKAATQEFFCPNCQSCIQKVVLRDRPV
PSRPQHTFRCADCFAFLIPVGNWIFGSRGQDDDYDIITDQVDTGVPQGTQPPPTGSSANKAPSTEVVPDQGKAPPSAVPSPALPDHGKAPTNGSTTSESK
PVHSEVAAGQEANGHVSVTSRDPSVTWNSESSGNKEPRQPGKDSDNVEVVIDGGKPSVDVTEDKRRGETPAPVPGTSEVTVVTSQPATIRPPRVAWEWDI
LKSIVYGGLAELITTLSIVTSAASADTETLKILAIGVANLIGGLFILTTNIWDLRCEQPRKLVVTSIETQSESEEVDRYCDNLGKRTNFKRHTFFAVLSF
LGFGLVPPVVYGFSFKESDDRDYKIAATAAASLVCVFLLAIGKAHAQKPPKTYLKSVAFYVTAGVMASGVSFLAGELFKKVMDDLGTFAPVAEAPPASPV
LGNWASY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G27870 Vacuolar iron transporter (VIT... Lus10022771
[exp]
0 1
AT3G54010 DEI1, PAS1 PASTICCINO 1, FKBP-type peptid... Lus10021502
[exp]
1.4 0.9487
AT1G78780 pathogenesis-related family pr... Lus10039018
[exp]
2.4 0.9485
AT1G63380 NAD(P)-binding Rossmann-fold s... Lus10007038
[exp]
4.1 0.9492
AT5G19440 NAD(P)-binding Rossmann-fold s... Lus10016388
[exp]
4.9 0.9440
AT2G14210 MADS AGL44, ANR1 ARABIDOPSIS NITRATE REGULATED ... Lus10028214
[exp]
6.5 0.9427
AT3G26770 NAD(P)-binding Rossmann-fold s... Lus10012575
[exp]
6.6 0.9328
AT1G29280 WRKY ATWRKY65, WRKY6... WRKY DNA-binding protein 65 (.... Lus10007305
[exp]
6.6 0.9480
AT3G57230 MADS AGL16 AGAMOUS-like 16 (.1.2) Lus10028215
[exp]
6.9 0.9299
AT1G29280 WRKY ATWRKY65, WRKY6... WRKY DNA-binding protein 65 (.... Lus10029252
[exp]
8.7 0.9444
AT3G02645 Plant protein of unknown funct... Lus10019721
[exp]
8.9 0.9262

Lus10022771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.