Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25110 465 / 1e-164 ATFATA fatA acyl-ACP thioesterase (.1) AT4G13050 457 / 2e-161 Acyl-ACP thioesterase (.1) AT1G08510 234 / 1e-73 FATB fatty acyl-ACP thioesterases B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011839 [exp] 711 / 0 AT3G25110 508 / 0.0 fatA acyl-ACP thioesterase (.1) Lus10025912 [exp] 565 / 0 AT3G25110 503 / 1e-179 fatA acyl-ACP thioesterase (.1) Lus10038190 [exp] 529 / 0 AT3G25110 493 / 1e-175 fatA acyl-ACP thioesterase (.1) Lus10017751 [exp] 239 / 3e-75 AT1G08510 602 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10033072 [exp] 239 / 3e-75 AT1G08510 605 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10007942 [exp] 223 / 4e-69 AT1G08510 288 / 6e-94 fatty acyl-ACP thioesterases B (.1) Lus10013480 [exp] 218 / 5e-67 AT1G08510 287 / 2e-93 fatty acyl-ACP thioesterases B (.1) Lus10000365 [exp] 213 / 5e-65 AT1G08510 274 / 2e-88 fatty acyl-ACP thioesterases B (.1) Lus10034617 [exp] 212 / 6e-65 AT1G08510 275 / 6e-89 fatty acyl-ACP thioesterases B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G245600 [exp] 494 / 5e-176 AT3G25110 521 / 0.0 fatA acyl-ACP thioesterase (.1) Potri.012G101500 [exp] 240 / 5e-76 AT1G08510 329 / 4e-110 fatty acyl-ACP thioesterases B (.1) Potri.018G072700 [exp] 235 / 7e-74 AT1G08510 611 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.015G099600 [exp] 233 / 2e-73 AT1G08510 330 / 2e-110 fatty acyl-ACP thioesterases B (.1) Potri.006G157200 [exp] 234 / 3e-73 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.006G155800 [exp] 234 / 3e-73 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.012G051400 [exp] 224 / 5e-70 AT1G08510 297 / 1e-97 fatty acyl-ACP thioesterases B (.1) Potri.010G117400 [exp] 219 / 1e-67 AT1G08510 294 / 2e-96 fatty acyl-ACP thioesterases B (.1) Potri.001G177600 [exp] 187 / 2e-55 AT1G08510 343 / 2e-115 fatty acyl-ACP thioesterases B (.1) Potri.001G177900 [exp] 185 / 8e-55 AT1G08510 339 / 5e-114 fatty acyl-ACP thioesterases B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF01643 [flax] [poplar] Acyl-ACP_TE Acyl-ACP thioesterase
Representative CDS sequence Show only first row Show all	>Lus10022772 pacid=23160014 polypeptide=Lus10022772 locus=Lus10022772.g ID=Lus10022772.BGIv1.0 annot-version=v1.0 ATGCTGTCGATGAAGCTTTCTCCCTGCAATGTAACGGATTTCCAACTCCACGCATTTCTCCCCCAATGCCGATTCCCGCCTCGAACCTCCCGCCCCTGTT TCCCGCCTCGTCGGAGCTCTGTTTCCTCCGCCGTGTGTAAGGCGGTTGACACCAGAGTTGCCGCGGCGGCGGCGGCTATTCAATCCGGGTCGGAGAAGGA AAAGACGGGGATCTCGGCTGACAGGCTTCGGCTTGGGAGCTTGACGGAAGATGGGTTGTCGTATAAGGAGAAGTTCATTGTCAGGTGCTATGAAGTTGGG ATTAACAAGACCGCCACTGTTGAGACCATTGCCAATCTCTTGCAGGAGGTAGGGTGCAACCACGCTCAGAGTGTTGGATTCTCGACAGACGGATTCGCTA CAACTCCCACAATGAGGAAGCTGCATCTCATTTGGGTGACTGCTCGGATGCACATTGAGATTTACAGATACCCAGCTTGGAGTGATGTAGTCGAAATCGA GACGTGGTGCCAAAGTGAAGGTAGGATCGGTACCAGGCGCGAACGGATCATCAAGGACTATGCTAATGGTGAAGTCATTGGGCGAGCTACTAGCAAATGG GTGATGATGAACCAAGATACTAGGCGGCTTCAGAAAGTCAACGATGAAGTTCGGGAGGAGTACTTAGTCTTCTGTCCCCGTGAACCGAGACTATCGTTCC CCGAGGAAAAGAACCGGAGCTTGATGAAGATTTTGAAACTAGAAGATCCTGCTCAGCATTACAGACTAGGACTCGTGCCGAGAAGAGCTGATCTGGACAT GAACCAGCATGTCAACAACGTAGCCTACATCGGATGGGTTCTCGAGAGCATGCCTCAAAAAGTCATCGACACGCACGAACTGCAATCAATCACCCTAGAC TACAGAAGGGAATGCCAACACGACGATGTGGTCGATTCGCTGACCGGTTTGGAACCCATGGACGAGTCTGAGTCAGAGCCCAAGAAAACCAATGGATCCG CTGCCCTGTCGCTTTCTGTTCATTGCAAAGAAGAGTCCCTTAACTTCCTGCACCTGCTTAGACTGGCGGGTGAGCGAAGGCTCGAGATAAACCGCGGCAG AACTGAATGGAGAAAGAAGCTAGGAAGATGA
AA sequence Show only first row Show all	>Lus10022772 pacid=23160014 polypeptide=Lus10022772 locus=Lus10022772.g ID=Lus10022772.BGIv1.0 annot-version=v1.0 MLSMKLSPCNVTDFQLHAFLPQCRFPPRTSRPCFPPRRSSVSSAVCKAVDTRVAAAAAAIQSGSEKEKTGISADRLRLGSLTEDGLSYKEKFIVRCYEVG INKTATVETIANLLQEVGCNHAQSVGFSTDGFATTPTMRKLHLIWVTARMHIEIYRYPAWSDVVEIETWCQSEGRIGTRRERIIKDYANGEVIGRATSKW VMMNQDTRRLQKVNDEVREEYLVFCPREPRLSFPEEKNRSLMKILKLEDPAQHYRLGLVPRRADLDMNQHVNNVAYIGWVLESMPQKVIDTHELQSITLD YRRECQHDDVVDSLTGLEPMDESESEPKKTNGSAALSLSVHCKEESLNFLHLLRLAGERRLEINRGRTEWRKKLGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10022772 [exp]	0	1
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10019096 [exp]	3.7	0.9469
AT3G12870			unknown protein		Lus10031198 [exp]	5.7	0.9388
AT1G80530			Major facilitator superfamily ...		Lus10028803 [exp]	8.3	0.9389
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	9.3	0.9443
AT5G10160			Thioesterase superfamily prote...		Lus10015830 [exp]	9.7	0.9371
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10002625 [exp]	10.2	0.9195
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10032467 [exp]	11.2	0.9325
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10023860 [exp]	14.4	0.9306
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10042966 [exp]	15.5	0.9345
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	17.5	0.9272

Compare expression of checked genes

Lus10022772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.